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SS-182: Reinvent4 on the psychedelic chemical space. #313

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Sulstice opened this issue Jun 27, 2024 · 1 comment
Open

SS-182: Reinvent4 on the psychedelic chemical space. #313

Sulstice opened this issue Jun 27, 2024 · 1 comment
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@Sulstice
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Sulstice commented Jun 27, 2024

We will be using REINVENT4: https://github.com/MolecularAI/REINVENT4 on the narcotics pihkal list.

1.) Train the model with the Pihkal book as the inputs
2.) Check the training using a visual output of generated compounds
3.) Integrate it into discord.

Read these two papers:

1.) https://arxiv.org/abs/1704.07555
2.) https://link.springer.com/article/10.1186/s13321-024-00812-5?utm_source=rct_congratemailt&utm_medium=email&utm_campaign=oa_20240221&utm_content=10.1186/s13321-024-00812-5

@Sulstice Sulstice added this to the v2.0 milestone Jun 27, 2024
@Sulstice Sulstice moved this to In Progress in Students Jun 27, 2024
@Sulstice Sulstice moved this to In Progress in Research & Development Jul 18, 2024
@Sulstice
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@thedevp

We are going to make a DVC pipeline for the training of the data.

1.) Take the directory narcotics and place it into it's own repository under Global-Chem: https://github.com/Global-Chem/private-workers/tree/master/machine_learning_operations/narcotics

2.) Edit the https://github.com/Global-Chem/private-workers/blob/master/machine_learning_operations/narcotics/mol.smi to include molesules only from Pihkal.

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