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testInputParsed.txt
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testInputParsed.txt
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>RS008811|BA000002.2/445649-445320|Aeropyrum pernix K1|RNaseP_arch
External loop : 0
Interior loop ( 1,330 ) GC; ( 2,329 ) GC: -330
Interior loop ( 2,329 ) GC; ( 3,328 ) CG: -340
Interior loop ( 3,328 ) CG; ( 4,327 ) GC: -240
Interior loop ( 4,327 ) GC; ( 5,326 ) GC: -330
Interior loop ( 5,326 ) GC; ( 6,325 ) CG: -340
Interior loop ( 6,325 ) CG; ( 7,324 ) GC: -240
Interior loop ( 7,324 ) GC; ( 8,323 ) CG: -340
Interior loop ( 8,323 ) CG; ( 9,322 ) CG: -330
Interior loop ( 9,322 ) CG; ( 10,321 ) GC: -240
Interior loop ( 10,321 ) GC; ( 11,320 ) GC: -330
Interior loop ( 11,320 ) GC; ( 12,319 ) CG: -340
Interior loop ( 12,319 ) CG; ( 13,318 ) CG: -330
Interior loop ( 13,318 ) CG; ( 14,296 ) GC: 571
Interior loop ( 14,296 ) GC; ( 15,295 ) GC: -330
Interior loop ( 15,295 ) GC; ( 16,294 ) CG: -340
Interior loop ( 16,294 ) CG; ( 17,293 ) GC: -240
Interior loop ( 17,293 ) GC; ( 18,292 ) GC: -330
Interior loop ( 18,292 ) GC; ( 19,291 ) CG: -340
Interior loop ( 20,48 ) CG; ( 21,47 ) CG: -330
Interior loop ( 21,47 ) CG; ( 23,45 ) CG: 40
Interior loop ( 23,45 ) CG; ( 24,44 ) GU: -140
Interior loop ( 24,44 ) GU; ( 25,43 ) GC: -210
Interior loop ( 25,43 ) GC; ( 26,42 ) CG: -340
Interior loop ( 26,42 ) CG; ( 27,41 ) CG: -330
Interior loop ( 27,41 ) CG; ( 28,40 ) CG: -330
Interior loop ( 28,40 ) CG; ( 29,39 ) CG: -330
Interior loop ( 29,39 ) CG; ( 30,38 ) CG: -330
Interior loop ( 30,38 ) CG; ( 31,37 ) CG: -330
Hairpin loop ( 31,37 ) CG : 410
Interior loop ( 59,232 ) CG; ( 60,231 ) UA: -210
Interior loop ( 60,231 ) UA; ( 61,230 ) CG: -240
Interior loop ( 61,230 ) CG; ( 62,229 ) CG: -330
Interior loop ( 62,229 ) CG; ( 71,228 ) GC: 470
Interior loop ( 71,228 ) GC; ( 72,227 ) CG: -340
Interior loop ( 72,227 ) CG; ( 73,226 ) CG: -330
Interior loop ( 73,226 ) CG; ( 74,225 ) GC: -240
Interior loop ( 74,225 ) GC; ( 75,224 ) GC: -330
Interior loop ( 76,89 ) GC; ( 77,88 ) CG: -340
Interior loop ( 77,88 ) CG; ( 78,87 ) CG: -330
Interior loop ( 78,87 ) CG; ( 79,86 ) CG: -330
Interior loop ( 79,86 ) CG; ( 80,85 ) CG: -330
Hairpin loop ( 80,85 ) CG : 40
Interior loop ( 90,104 ) AU; ( 91,103 ) CG: -220
Interior loop ( 91,103 ) CG; ( 92,102 ) GC: -240
Interior loop ( 92,102 ) GC; ( 93,101 ) GC: -330
Interior loop ( 93,101 ) GC; ( 94,100 ) GC: -330
Interior loop ( 94,100 ) GC; ( 95,99 ) UA: -220
Hairpin loop ( 95,99 ) UA : 620
Interior loop ( 105,223 ) GC; ( 106,222 ) GC: -330
Interior loop ( 106,222 ) GC; ( 110,220 ) CG: 270
Interior loop ( 110,220 ) CG; ( 111,219 ) GC: -240
Interior loop ( 111,219 ) GC; ( 112,218 ) GC: -330
Interior loop ( 112,218 ) GC; ( 113,217 ) CG: -340
Interior loop ( 113,217 ) CG; ( 115,216 ) CG: 50
Interior loop ( 115,216 ) CG; ( 117,215 ) GC: 140
Interior loop ( 117,215 ) GC; ( 122,210 ) GU: 300
Interior loop ( 122,210 ) GU; ( 124,209 ) CG: 130
Interior loop ( 124,209 ) CG; ( 126,208 ) CG: 50
Interior loop ( 126,208 ) CG; ( 127,207 ) GC: -240
Interior loop ( 127,207 ) GC; ( 128,205 ) GU: 230
Interior loop ( 128,205 ) GU; ( 129,203 ) CG: 130
Interior loop ( 129,203 ) CG; ( 130,202 ) CG: -330
Interior loop ( 130,202 ) CG; ( 131,201 ) CG: -330
Interior loop ( 131,201 ) CG; ( 132,200 ) CG: -330
Interior loop ( 132,200 ) CG; ( 133,199 ) GC: -240
Interior loop ( 133,199 ) GC; ( 134,198 ) GC: -330
Interior loop ( 134,198 ) GC; ( 135,197 ) GC: -330
Interior loop ( 135,197 ) GC; ( 136,196 ) GC: -330
Interior loop ( 136,196 ) GC; ( 139,193 ) UG: 60
Interior loop ( 139,193 ) UG; ( 141,191 ) UA: -40
Interior loop ( 141,191 ) UA; ( 142,190 ) CG: -240
Interior loop ( 142,190 ) CG; ( 149,188 ) GC: 360
Interior loop ( 149,188 ) GC; ( 150,187 ) CG: -340
Interior loop ( 150,187 ) CG; ( 151,186 ) GC: -240
Interior loop ( 151,186 ) GC; ( 152,185 ) GC: -330
Interior loop ( 152,185 ) GC; ( 154,183 ) UA: 110
Interior loop ( 154,183 ) UA; ( 156,181 ) GC: 110
Interior loop ( 156,181 ) GC; ( 157,178 ) GC: 280
Interior loop ( 157,178 ) GC; ( 158,177 ) CG: -340
Interior loop ( 158,177 ) CG; ( 159,176 ) CG: -330
Interior loop ( 159,176 ) CG; ( 160,175 ) GC: -240
Interior loop ( 160,175 ) GC; ( 161,174 ) CG: -340
Interior loop ( 161,174 ) CG; ( 162,173 ) CG: -330
Interior loop ( 162,173 ) CG; ( 163,172 ) CG: -330
Interior loop ( 163,172 ) CG; ( 164,171 ) UA: -210
Interior loop ( 164,171 ) UA; ( 165,170 ) GC: -210
Hairpin loop ( 165,170 ) GC : 70
Multi loop ( 75,224 ) GC : 40
Interior loop ( 234,281 ) AU; ( 236,278 ) GC: 140
Interior loop ( 236,278 ) GC; ( 237,277 ) GC: -330
Interior loop ( 237,277 ) GC; ( 238,272 ) CG: 360
Interior loop ( 238,272 ) CG; ( 239,271 ) CG: -330
Interior loop ( 239,271 ) CG; ( 240,270 ) CG: -330
Interior loop ( 240,270 ) CG; ( 241,269 ) CG: -330
Interior loop ( 241,269 ) CG; ( 242,268 ) CG: -330
Interior loop ( 242,268 ) CG; ( 243,267 ) GC: -240
Interior loop ( 243,267 ) GC; ( 244,266 ) GC: -330
Interior loop ( 244,266 ) GC; ( 245,265 ) GC: -330
Interior loop ( 245,265 ) GC; ( 246,264 ) CG: -340
Interior loop ( 246,264 ) CG; ( 249,261 ) UG: -20
Interior loop ( 249,261 ) UG; ( 250,260 ) GC: -140
Interior loop ( 250,260 ) GC; ( 252,258 ) GC: -10
Hairpin loop ( 252,258 ) GC : 420
Multi loop ( 19,291 ) CG : 220