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Hi,I have some quesetion about Cluster Identity.When using transcriptomic data mapping to identify cell types in scATAC, I have some very confusing cells, This is because I have a large number of samples and a huge number of cells. There is also some overlap between certain cell types. I would like to ask whether I can filter cells based on the mapping scores of predictedGroup_Un. For example, if the score is less than 0.8, I consider that the cell characteristics are not obvious, and I can directly exclude these cells from subsequent analyses.I'd like to ask whether this is reasonable.
The text was updated successfully, but these errors were encountered:
Hi @superSXB! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other
responsibilities as a PI. I have not been responding to issue posts and I have not been pushing updates to the software. We are actively searching to hire
a computational biologist to continue to develop and maintain ArchR and related tools. If you know someone who might be a good fit, please let us know!
In the meantime, your issue will likely go without a reply. Most issues with ArchR right not relate to compatibility. Try reverting to R 4.1 and Bioconductor 3.15.
Newer versions of Seurat and Matrix also are causing issues. Sorry for not being able to provide active support for this package at this time.
Hi,I have some quesetion about Cluster Identity.When using transcriptomic data mapping to identify cell types in scATAC, I have some very confusing cells, This is because I have a large number of samples and a huge number of cells. There is also some overlap between certain cell types. I would like to ask whether I can filter cells based on the mapping scores of predictedGroup_Un. For example, if the score is less than 0.8, I consider that the cell characteristics are not obvious, and I can directly exclude these cells from subsequent analyses.I'd like to ask whether this is reasonable.
The text was updated successfully, but these errors were encountered: