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assertion failure in H5D__mpio_collective_filtered_vec_io #3337

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qkoziol opened this issue Aug 3, 2023 · 2 comments · Fixed by #3340
Closed

assertion failure in H5D__mpio_collective_filtered_vec_io #3337

qkoziol opened this issue Aug 3, 2023 · 2 comments · Fixed by #3340
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Component - C Library Core C library issues (usually in the src directory) Component - Parallel Parallel HDF5 (NOT thread-safety) Priority - 1. High 🔼 These are important issues that should be resolved in the next release Type - Bug / Bugfix Please report security issues to help@hdfgroup.org instead of creating an issue on GitHub

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@qkoziol
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qkoziol commented Aug 3, 2023

Describe the bug
Crash in t_pmulti_dset test:

Configuration:
Layout: Chunked
Shape same: No
I/O type: Single
MPI I/O type: Collective
Low level MPI I/O:Collective
Type conversion: No
Data filter: Yes
Testing random I/O Assertion failed: (vec_idx < iovec_count), function H5D__mpio_collective_filtered_vec_io, file H5Dmpio.c, line 5498.

===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 91513 RUNNING AT Nile.local
= EXIT CODE: 6
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES

YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Terminated: 15 (signal 15)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
7.23 real 33.77 user 8.05 sys
make[3]: *** [t_pmulti_dset.chkexe_] Error 1
make[2]: *** [build-check-p] Error 1
make[1]: *** [test] Error 2
make: *** [check-am] Error 2

Expected behavior
A clear and concise description of what you expected to happen.

Platform (please complete the following information)
Current version of the develop branch, on my Mac, with this configuration:

env CC=mpicc CXX=mpic++ FC=mpif90 ../hdf5/configure --enable-build-mode=debug --enable-maintainer-mode --enable-developer-warnings --enable-diags --disable-shared --enable-parallel --enable-cxx --enable-fortran --enable-map-api --enable-threadsafe --enable-build-all --enable-mirror-vfd --enable-subfiling-vfd --enable-unsupported

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@qkoziol
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qkoziol commented Aug 3, 2023

@jhendersonHDF - related to your recent PR?

@jhendersonHDF
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Hmm yes, though I don't know why I didn't see this.

@jhendersonHDF jhendersonHDF self-assigned this Aug 3, 2023
@derobins derobins added Merge - To 1.14 Priority - 1. High 🔼 These are important issues that should be resolved in the next release Component - C Library Core C library issues (usually in the src directory) Component - Parallel Parallel HDF5 (NOT thread-safety) Type - Bug / Bugfix Please report security issues to help@hdfgroup.org instead of creating an issue on GitHub and removed Merge - To 1.14 labels Aug 3, 2023
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Labels
Component - C Library Core C library issues (usually in the src directory) Component - Parallel Parallel HDF5 (NOT thread-safety) Priority - 1. High 🔼 These are important issues that should be resolved in the next release Type - Bug / Bugfix Please report security issues to help@hdfgroup.org instead of creating an issue on GitHub
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3 participants