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macos.yml
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name: ParFlow MacOS CI Test
#
# Notes
# Currently using GCC for the build rather than Clang
# Python 3.12 used rather than more current available versions since Numba library does not work with later versions
on: [push, pull_request]
jobs:
build:
name: ${{ matrix.config.name }}
runs-on: ${{ matrix.config.os }}
strategy:
# fail-fast: true
matrix:
config:
- {
name: "MacOS 14",
os: macos-14,
cudaos: '',
python: "true",
backend: "none",
amps_layer: mpi1,
netcdf: "true"
}
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.12'
- uses: fortran-lang/setup-fortran@v1
with:
compiler: gcc
- uses: mpi4py/setup-mpi@v1
with:
mpi: openmpi
- name: HDF5 Install
run: |
# pkg-config formula is deprecated but it's still installed
# in GitHub Actions runner now. We can remove this once
# pkg-config formula is removed from GitHub Actions runner.
brew uninstall pkg-config@0.29.2
brew install hdf5-mpi
# Cache dependencies so don't have to rebuild on each test.
# Can flush caches by resetting the CACHE_VERSION secret on GitHub
# settings for the project (using date-timestamp for secret).
- name: Cache dependencies
uses: actions/cache@v4
id: cache-parflow-dependencies
env:
cache-name: cache-parflow-dependencies
cache-parflow-hit: ${{steps.cache-parflow-dependencies.outputs.cache-hit}}
with:
path: "~/depend"
key: cache-${{ matrix.config.os }}-${{ matrix.config.backend }}-${{ secrets.CACHE_VERSION }}
- name: Directory Setup
run: |
mkdir -p $HOME/install
echo "PARFLOW_DIR=$HOME/install" >> $GITHUB_ENV
echo "Setting PARFLOW_DIR=$HOME/install"
mkdir -p $HOME/depend/{include,lib}
echo "PARFLOW_DEP_DIR=$HOME/depend" >> $GITHUB_ENV
echo "Setting PARFLOW_DEP_DIR=$HOME/depend"
echo "PARFLOW_DEP_DIR=$HOME/depend" >> $GITHUB_ENV
echo "$HOME/depend/bin" >> $GITHUB_PATH
export LD_LIBRARY_PATH=${PARFLOW_DEP_DIR}/lib64:${PARFLOW_DEP_DIR}/lib:${LD_LIBRARY_PATH}
echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" >> $GITHUB_ENV
export PARFLOW_PYTHON3=/opt/homebrew/bin/python3.12
echo "PARFLOW_PYTHON3=${PARFLOW_PYTHON3}" >> $GITHUB_ENV
- name: CMake Install
if: matrix.config.os != 'macos-14'
env:
CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}}
run: |
if [[ "$CACHE_HIT" != 'true' ]]; then
echo "Installing"
cd ~/depend
echo "cache-${{ matrix.config.os }}-${{ matrix.config.backend }}-${{ secrets.CACHE_VERSION }}" > ~/depend/cache-key
wget -nv --no-check-certificate https://github.com/Kitware/CMake/releases/download/v3.25.1/cmake-3.25.1-linux-x86_64.tar.gz
tar -xf cmake-3.25.1-linux-x86_64.tar.gz
$HOME/depend/cmake-3.25.1-linux-x86_64/bin/cmake --version
fi
echo "$HOME/depend/cmake-3.25.1-linux-x86_64/bin" >> $GITHUB_PATH
# Package netcdf is missing features needed by the ParFlow writers, build from source
# netcdf is True when we want to build the PF NetCDF writer.
- name: NetCDF Install
env:
CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}}
if: matrix.config.netcdf == 'true'
run: |
if [[ "$CACHE_HIT" != 'true' ]]; then
URL=https://github.com/Unidata/netcdf-c/archive/v4.9.0.tar.gz
mkdir netcdf-c
cd netcdf-c
curl -L $URL | tar --strip-components=1 -xz
CC=mpicc CPPFLAGS=-I/opt/homebrew/include LDFLAGS=-L/opt/homebrew/lib/ ./configure --prefix=$PARFLOW_DEP_DIR
make
make install
cd ..
URL=https://github.com/Unidata/netcdf-fortran/archive/v4.5.4.tar.gz
mkdir netcdf-fortran
cd netcdf-fortran
curl -L $URL | tar --strip-components=1 -xz
CC=mpicc FC=mpifort CPPFLAGS=-I${PARFLOW_DEP_DIR}/include LDFLAGS=-L${PARFLOW_DEP_DIR}/lib ./configure --prefix=${PARFLOW_DEP_DIR}
make
make install
fi
echo "NETCDF_FLAGS=-DNETCDF_DIR=$PARFLOW_DEP_DIR -DPARFLOW_ENABLE_HDF5=TRUE" >> $GITHUB_ENV
- name: SILO Install
env:
CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}}
run: |
if [[ "$CACHE_HIT" != 'true' ]]; then
URL=https://github.com/LLNL/Silo/archive/refs/tags/4.11.tar.gz
mkdir silo
cd silo
curl -L $URL | tar --strip-components=1 -xz
./configure --disable-silex --disable-hzip --disable-fpzip --prefix=$PARFLOW_DEP_DIR --disable-fortran --with-readline=no
make -j 2 install
fi
- name: HYPRE Install
env:
CACHE_HIT: ${{steps.cache-parflow-dependencies.outputs.cache-hit}}
run: |
if [[ "$CACHE_HIT" != 'true' ]]; then
URL=https://github.com/hypre-space/hypre/archive/v2.26.0.tar.gz
mkdir hypre
cd hypre
curl -L $URL | tar --strip-components=1 -xz
cd src
CC=mpicc CXX=mpic++ FC=mpif77 F77=mpif90 ./configure --prefix=$PARFLOW_DEP_DIR
make -j 2 install
fi
- name: ParFlow CMake Configure
run: |
mpicc -v
if [[ "${{ matrix.config.amps_layer }}" == "oas3" ]]; then HAVE_CLM="OFF"; else HAVE_CLM="ON"; fi
# SGS 2024-11-22 Had to hack in homebrew file paths for TCL. Why are links not in /opt/homebrew/bin and lib anymore?
# Why can't we get TCL paths from pkgconf?
CC=mpicc CXX=mpicxx F77=mpif77 FC=mpif90 cmake -Bbuild -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_FLAGS="-Wall -Werror -Wno-unused-result -Wno-unused-function" -DPARFLOW_ENABLE_TIMING=TRUE -DPARFLOW_AMPS_LAYER=${{ matrix.config.amps_layer }} -DPARFLOW_ACCELERATOR_BACKEND=${{ matrix.config.backend }} -DPARFLOW_AMPS_SEQUENTIAL_IO=true -DPARFLOW_HAVE_CLM=${HAVE_CLM} -DHYPRE_ROOT=$PARFLOW_DEP_DIR -DOAS3_ROOT=$PARFLOW_DEP_DIR -DSILO_ROOT=$PARFLOW_DEP_DIR -DPARFLOW_ENABLE_PYTHON=${{ matrix.config.python }} $NETCDF_FLAGS $KOKKOS_FLAGS $RMM_FLAGS -DCMAKE_INSTALL_PREFIX=$PARFLOW_DIR -DTCL_INCLUDE_PATH=/opt/homebrew/bin/usr/include -DTCL_LIBRARY=/opt/homebrew/Cellar/tcl-tk@8/8.6.15/lib/libtcl8.6.dylib -DTCL_TCLSH=/opt/homebrew/Cellar/tcl-tk@8/8.6.15/bin/tclsh8.6 -DPython3_EXECUTABLE=$PARFLOW_PYTHON3
- name: ParFlow CMake Build
run: (cd build; make -j 2 VERBOSE=1 install)
# Can't test with GPU since have no GPU hardware on testing nodes, GPU test is build only
- name: ParFlow CTest
if: matrix.config.backend != 'cuda' && matrix.config.backend != 'kokkos'
run: |
(cd build; ctest --output-on-failure)