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run_kde memory issue #19

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zhanglab2008 opened this issue Jun 10, 2022 · 0 comments

zhanglab2008 commented Jun 10, 2022

Hi, I am running ssam on MERFISH data and I got stuck on the run_kde step. It keeps returns memory error.

MemoryError: Unable to allocate 1.44 TiB for an array with shape (28153, 35952, 1, 196) and data type float64

I noticed someone has reported this issue earlier. #2
Have you fixed the problem yet? I click the dask branch link but it doesn't seem to work.
https://github.com/eilslabs/ssam/tree/dask
Thanks in advance!!

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