ZAF 2011-15

[eclee25]

No description provided.

[QLLZ]

Data pull:
HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8
config

[QLLZ]

Model run:
HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

[QLLZ]

country data report failed: log file

[QLLZ]

Country data report

• In this report, there are no plots of

1. Variance of cases in gam input per grid cell
2. Variance of rates per 100000 in gam input per grid cell

because there are few data, so each t, sx, and sy in gam input only has one y value. variance is unable to be estimated.

• for gam input cases plot, it's not in log scale because all the observations are 0.

[javierps]

Very small number of cases. This causes issues in convergence.

Suggestion: reject and create a new model with no w.

[eclee25]

Poor convergence in rho and sd_w due to small case counts.

Opinion: Temp Approve and rerun with spatial_effect: no

[QLLZ]

Updated config

Data pull:
HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

[QLLZ]

model run

HASH f56d5a942b106ad7750b9be31c0456cefa5b6dc7

[eclee25]

Some slight apparent divergences in the middle of sampling but otherwise ok.

[QLLZ]

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

[QLLZ]

Failed data pull log file

[QLLZ]

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

[QLLZ]

country data report

[QLLZ]

Results look good.

Suggestion: accept.

[eclee25]

Almost all 0s, no-W model. Diags look good.
Approve

[QLLZ]

Data pull failed in prepare_stan_input step: https://github.com/HopkinsIDD/cholera-mapping-reports/blob/Sep_2023_nocovar_production_runs/sbatch_logs/country_data_reports/errors/Sep2023_no_w_109364_0.log

[eclee25]

Merged in branches related to minor fixes in the UN population adjustment and admin 0 clipping precision which resolve and speed up the data pull and grid-shape computations.

Rerun no-W model on dev to finalize.

[eclee25]

Due to errors in the output shapefile ordering, we reran this model as a production run on dev_fix_unpop_new which seems to have resolved the issue.

Approve