release_notes.txt

version 0.1.0
- candidate calling condition has changed from tstat.
- candidate clustering method has changed to the Rodriguez and Laio's algorithm (PMID: 24970081).
- rwr matrices are not stored by default, and are kept only to upper-distance if asked to store.
- added prefix to input arguments. Used in final output filename.

version 0.2.0
- added windowed random walk capability
- outputing z-scores for summits
- changed validation of rwr results for completion. Checking log file generated by each processor instead of number of lines in file.

version 0.2.1
- bug fix for sliding window
- adaptive sliding window size: window size being determined by "0.8 < reads_within_range/total_reads" condition
- zscore for summits being aggregated into a single file from all chromosomes

version 0.2.2
- arguments for slidign window removed (adaptive sliding window)
- added an option for compressing and removing normalized rwr files

version 0.2.3
- bugfix: in threaded mode window size determination for rwr sliding window method is fixed