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Scipion Java

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Airen Zaldivar Peraza edited this page Dec 18, 2015 · 84 revisions

As you may know ShowJ is our default viewer for most of Scipion objects and Particle Picker allows us to pick particles either manually or automatically, or visualize coordinates . Scipion sources packages related to ShowJ and Particle Picking are displayed below. They include:

  • xmipp.jni : Contains Java bindings with C++ code

  • xmipp.viewer.particlepicker.tiltpair: Contains tilt pair picker implementation

  • xmipp.viewer.particlepicker: Contains base classes for particle picking: frame, canvas, micrograph, particles dialog, etc.

  • xmipp.viewer.particlepicker.training: Contains supervised picker implementation

  • xmipp.viewer.particlepicker.tiltpair: Contains tilt pair picker implementation

In the following class diagram we display ShowJ main classes and its relations:

ShowJ Class Diagram
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