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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("metadata<-")
export(.dmrs.unify)
export(CpGNAexcl)
export(CpGexcl)
export(SummarizedExperiment)
export(add_dmrcate)
export(add_ipdmr)
export(barplots_)
export(barplots_450k)
export(barplots_EPIC)
export(barplots_MM280)
export(barplots_distToSS)
export(bc_sva)
export(beta2m)
export(circosplot)
export(colData)
export(DataFrame)
export(densityPlot)
export(estimate_PCA_corr)
export(formatSampleSheet)
export(getBetasRanges)
export(getDMPranges)
export(getDMPs)
export(getDMRs)
export(getDeltaBetas)
export(getDeltaBetas2)
export(getManifest)
export(getMask)
export(getMvals)
export(getPlateform)
export(getResults)
export(imputeNA)
export(m_logistic)
export(m_regression)
export(makeSummarizedExperimentFromBetas)
export(makepca)
export(manhattan)
export(metadata)
export(methyldiff)
export(minfi2Betas)
export(my_density)
export(my_dmrplot)
export(my_scatterPlot)
export(my_track)
export(my_venn)
export(my_venn_)
export(my_venn_oriented)
export(my_violin)
export(my_volcano)
export(my_volcanohmean)
export(my_volcanomax)
export(my_volcanomean)
export(nbprobes)
export(nbsamples)
export(nbsentrix)
export(newBetas)
export(plot_Channels)
export(plot_Channels2)
export(plot_Detection)
export(plot_NA)
export(plot_PCA_contribution)
export(plot_background)
export(plot_channel_switch)
export(probes)
export(replaceByMean)
export(resultsToLong)
export(samples)
export(searchDMR_combp)
export(searchDMR_dmrcate)
export(searchDMR_dmrff)
export(searchDMR_ipdmr)
export(sentrix)
export(sesame2Betas)
export(setColData)
export(subSetMval)
export(toGeoSubmission)
export(variables)
export(violin_plot)
export(volcano)
export(MethylResultSet)
export(getBetas)
exportClasses(Betas)
exportClasses(Mvals)
exportMethods(colData)
exportMethods(getBetas)
exportMethods(getDMRs)
exportMethods(getMvals)
exportMethods(nbprobes)
exportMethods(nbsamples)
exportMethods(nbsentrix)
exportMethods(plot_Channels)
exportMethods(plot_Channels2)
exportMethods(probes)
exportMethods(samples)
exportMethods(sentrix)
exportMethods(setColData)
exportMethods(toGeoSubmission)
exportMethods(variables)
#import(ENmix)
import(Gviz)
import(randomForest)
import(SummarizedExperiment)
import(assertthat)
#import(dmrff)
import(dplyr)
import(ggplot2)
import(ggpubr)
import(ggvenn)
import(purrr)
import(readr)
import(rstatix)
import(sesame)
import(sesameData)
import(stringr)
import(tidyr)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
#importFrom(FlowSorted.Blood.EPIC,estimateCellCounts2)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,DataFrame)
#importFrom(minfi,densityPlot)
#importFrom(minfi,detectionP)
#importFrom(minfi,estimateCellCounts)
#importFrom(minfi,fixMethOutliers)
#importFrom(minfi,getBeta)
#importFrom(minfi,getQC)
#importFrom(minfi,getSex)
#importFrom(minfi,mapToGenome)
#importFrom(minfi,preprocessFunnorm)
#importFrom(minfi,preprocessRaw)
#importFrom(minfi,read.metharray.exp)
#importFrom(wateRmelon,agep)