MANIFEST

bin/bam_stats.pl
bin/bam_to_sra_sub.pl
bin/bwa_aln.pl
bin/bwa_mem.pl
bin/cpanm
bin/diff_bams.pl
bin/monitor.pl
Changes
docs.tar.gz
INSTALL
lib/PCAP.pm
lib/PCAP/Bam.pm
lib/PCAP/Bam/Bas.pm
lib/PCAP/Bam/Stats.pm
lib/PCAP/Bwa.pm
lib/PCAP/Bwa/Meta.pm
lib/PCAP/Cli.pm
lib/PCAP/SRA.pm
lib/PCAP/Threaded.pm
LICENSE
Makefile.PL
MANIFEST			This list of files
MANIFEST.SKIP
prerelease.sh
README.md
setup.sh
share/cv_tables/ICGC/dcc_project_code.txt
share/cv_tables/ICGC/dcc_specimen_type.txt
t/1_pm_compile.t
t/2_pl_compile.t
t/3_external_progs.t
t/pcap.t
t/pcapBam.t
t/pcapBamBas.t
t/pcapBamStats.t
t/pcapBwa.t
t/pcapBwaMeta.t
t/pcapCli.t
t/pcapSra.t
t/pcapThreaded.t
testData/1.fq
testData/1_1.fq
testData/1_2.fq
testData/2_1.fq
testData/3_2.fq
testData/data.file
testData/empty.bam
testData/empty.bam.bas
testData/empty.file
testData/empty.fq
testData/empty_r1_1.fq
testData/empty_r1_2.fq
testData/empty_r2_1.fq
testData/empty_r2_2.fq
testData/header.bam
testData/header.sam
testData/malformed_head.bam
testData/malformed_head.sam
testData/md5.bam
testData/md5.bam.md5
testData/multi_sample.bam
testData/multi_sample.sam
testData/no_readgroups.bam
testData/no_readgroups.sam
testData/not_really_a.bam
testData/paired.bam
testData/Stats.bam
testData/Stats.bam.bas
testData/test.bam.bas
testData/unpaired.bam