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Treatment.md

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igvfclient::Treatment

A protein or chemical treatment applied to samples such as lipopolysaccharide, interleukin-2, or leucine.

Properties

Name Type Description Notes
release_timestamp character The date the object was released. [optional]
lab character Lab associated with the submission. [optional]
award character Grant associated with the submission. [optional]
sources set[character] The originating lab(s) or vendor(s). [optional]
lot_id character The lot identifier provided by the originating lab or vendor. [optional] [Pattern: ^(\S+(\s
product_id character The product identifier provided by the originating lab or vendor. [optional] [Pattern: ^(\S+(\s
documents set[character] Documents that describe the treatment protocol details. [optional]
status character The status of the metadata object. [optional] [Enum: [archived, deleted, in progress, released]]
schema_version character The version of the JSON schema that the server uses to validate the object. [optional] [Pattern: ^\d+(\.\d+)*$]
uuid character The unique identifier associated with every object. [optional]
notes character DACC internal notes. [optional] [Pattern: ^(\S+(\s
aliases set[character] Lab specific identifiers to reference an object. [optional]
creation_timestamp character The date the object was created. [optional]
submitted_by character The user who submitted the object. [optional]
submitter_comment character Additional information specified by the submitter to be displayed as a comment on the portal. [optional] [Pattern: ^(\S+(\s
description character A plain text description of the object. [optional] [Pattern: ^(\S+(\s
amount numeric Specific quantity of the applied treatment (used in conjunction with amount_units). [optional]
amount_units character A unit for an amount other than those for time or temperature. [optional] [Enum: [mg/kg, mg/mL, mM, ng/mL, nM, percent, μg/kg, μg/kg, μg/mL, μM, kpa]]
duration numeric Duration indicates the time elapsed between the start and end of the treatment. [optional]
duration_units character A unit of time. [optional] [Enum: [second, minute, hour, day]]
pH numeric Final pH of the solution containing a chemical compound (if applicable) [optional]
purpose character The intended purpose for treating the samples. [optional] [Enum: [activation, agonist, antagonist, control, differentiation, de-differentiation, perturbation, selection, stimulation]]
post_treatment_time numeric Post treatment time in conjunction with post treatment time units is used to specify the time that has passed between the point when biosamples were removed from the treatment solution before being sampled or treated with the next treatment. [optional]
post_treatment_time_units character A unit of time. [optional] [Enum: [minute, hour, day, week, month]]
temperature numeric The temperature in Celsius to which the sample was exposed [optional]
temperature_units character A unit of temperature. [optional] [Enum: [Celsius]]
treatment_type character The classification of treatment agent that specifies its exact molecular nature. [optional] [Enum: [chemical, protein, environmental]]
treatment_term_id character Ontology identifier describing a component in the treatment. [optional] [Pattern: ^((CHEBI:[0-9]{1,7})
treatment_term_name character Ontology term describing a component in the treatment that is the principal component affecting the biosample being treated. Examples: interferon gamma, interleukin-4, Fibroblast growth factor 2, 20-hydroxyecdysone, 5-bromouridine etc. [optional]
depletion character Treatment is depleted. [optional]
@id character [optional]
@type array[character] [optional]
summary character [optional]
biosamples_treated set[character] The samples which have been treated using this treatment. [optional]