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Internal Server Error (500) when destroying a dataset: foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset" #3875

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pdurbin opened this issue Jun 1, 2017 · 3 comments
Closed

Internal Server Error (500) when destroying a dataset: foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset" #3875

pdurbin opened this issue Jun 1, 2017 · 3 comments
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@kcondon
Milestone
4.6.2 - Tabular M...

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@pdurbin
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pdurbin commented Jun 1, 2017

I just ran the full API test suite on both the phoenix server (twice) and on my laptop as of 0c4ca84 in the "develop" branch (we're close to releasing 4.6.2) and I'm getting a 500 error when I attempt to destroy a dataset.

I'll put the full stacktrace from my laptop below, but here's the short version:

Internal Exception: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset" Detail: Key (id)=(580) is still referenced from table "dataset".

To reproduce this regression, simply run the DatasetsIT.java class from NetBeans or Maven. Here is the line that's expecting a 200 response but gets a 500:

dataverse/src/test/java/edu/harvard/iq/dataverse/api/DatasetsIT.java

Line 752 in 0c4ca84

assertEquals(200, destroyDatasetResponse.getStatusCode()); 

Local Exception Stack: 
Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset"
  Detail: Key (id)=(580) is still referenced from table "dataset".
Error Code: 0
Call: DELETE FROM DVOBJECT WHERE (ID = ?)
	bind => [1 parameter bound]
Query: DeleteObjectQuery([DataFile id:580 name:null])
	at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:340)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.processExceptionForCommError(DatabaseAccessor.java:1611)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeDirectNoSelect(DatabaseAccessor.java:898)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeNoSelect(DatabaseAccessor.java:962)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:631)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:558)
	at org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:2002)
	at org.eclipse.persistence.sessions.server.ClientSession.executeCall(ClientSession.java:298)
	at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
	at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.deleteObject(DatasourceCallQueryMechanism.java:203)
	at org.eclipse.persistence.internal.queries.StatementQueryMechanism.deleteObject(StatementQueryMechanism.java:104)
	at org.eclipse.persistence.queries.DeleteObjectQuery.executeDatabaseQuery(DeleteObjectQuery.java:218)
	at org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:899)
	at org.eclipse.persistence.queries.DatabaseQuery.executeInUnitOfWork(DatabaseQuery.java:798)
	at org.eclipse.persistence.queries.ObjectLevelModifyQuery.executeInUnitOfWorkObjectLevelModifyQuery(ObjectLevelModifyQuery.java:108)
	at org.eclipse.persistence.queries.DeleteObjectQuery.executeInUnitOfWorkObjectLevelModifyQuery(DeleteObjectQuery.java:119)
	at org.eclipse.persistence.queries.ObjectLevelModifyQuery.executeInUnitOfWork(ObjectLevelModifyQuery.java:85)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.internalExecuteQuery(UnitOfWorkImpl.java:2896)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1804)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1786)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1737)
	at org.eclipse.persistence.internal.sessions.CommitManager.deleteAllObjects(CommitManager.java:336)
	at org.eclipse.persistence.internal.sessions.CommitManager.deleteAllObjects(CommitManager.java:290)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitToDatabase(UnitOfWorkImpl.java:1444)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitToDatabaseWithPreBuiltChangeSet(UnitOfWorkImpl.java:1587)
	at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.writeChanges(RepeatableWriteUnitOfWork.java:452)
	at org.eclipse.persistence.internal.jpa.EntityManagerImpl.flush(EntityManagerImpl.java:863)
	at org.eclipse.persistence.internal.jpa.QueryImpl.performPreQueryFlush(QueryImpl.java:963)
	at org.eclipse.persistence.internal.jpa.QueryImpl.executeReadQuery(QueryImpl.java:207)
	at org.eclipse.persistence.internal.jpa.QueryImpl.getResultList(QueryImpl.java:469)
	at edu.harvard.iq.dataverse.DataverseRoleServiceBean.directRoleAssignments(DataverseRoleServiceBean.java:225)
	at sun.reflect.GeneratedMethodAccessor279.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
	at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
	at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
	at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
	at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
	at sun.reflect.GeneratedMethodAccessor106.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
	at sun.reflect.GeneratedMethodAccessor108.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
	at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
	at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
	at com.sun.proxy.$Proxy462.directRoleAssignments(Unknown Source)
	at edu.harvard.iq.dataverse.__EJB31_Generated__DataverseRoleServiceBean__Intf____Bean__.directRoleAssignments(Unknown Source)
	at edu.harvard.iq.dataverse.engine.command.impl.DestroyDatasetCommand.executeImpl(DestroyDatasetCommand.java:76)
	at edu.harvard.iq.dataverse.engine.command.AbstractVoidCommand.execute(AbstractVoidCommand.java:29)
	at edu.harvard.iq.dataverse.engine.command.AbstractVoidCommand.execute(AbstractVoidCommand.java:13)
	at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:207)
	at sun.reflect.GeneratedMethodAccessor256.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
	at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
	at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
	at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
	at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
	at sun.reflect.GeneratedMethodAccessor106.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
	at sun.reflect.GeneratedMethodAccessor108.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
	at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
	at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
	at com.sun.proxy.$Proxy502.submit(Unknown Source)
	at edu.harvard.iq.dataverse.__EJB31_Generated__EjbDataverseEngine__Intf____Bean__.submit(Unknown Source)
	at edu.harvard.iq.dataverse.api.AbstractApiBean.execCommand(AbstractApiBean.java:411)
	at edu.harvard.iq.dataverse.api.Datasets.lambda$destroyDataset$101(Datasets.java:212)
	at edu.harvard.iq.dataverse.api.AbstractApiBean.response(AbstractApiBean.java:470)
	at edu.harvard.iq.dataverse.api.Datasets.destroyDataset(Datasets.java:211)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171)
	at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103)
	at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:271)
	at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
	at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
	at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
	at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254)
	at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028)
	at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:372)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:381)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:344)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:221)
	at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:205)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at edu.harvard.iq.dataverse.api.ApiBlockingFilter.doFilter(ApiBlockingFilter.java:162)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:30)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:873)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:739)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:575)
	at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:546)
	at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:428)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:378)
	at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:34)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
	at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
	at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
	at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282)
	at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
	at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
	at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
	at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
	at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
	at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
	at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
	at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
	at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
	at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
	at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
	at java.lang.Thread.run(Thread.java:745)
Caused by: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset"
  Detail: Key (id)=(580) is still referenced from table "dataset".
	at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2101)
	at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1834)
	at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:255)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:510)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:386)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.executeUpdate(AbstractJdbc2Statement.java:332)
	at sun.reflect.GeneratedMethodAccessor232.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.postgresql.ds.jdbc23.AbstractJdbc23PooledConnection$StatementHandler.invoke(AbstractJdbc23PooledConnection.java:453)
	at com.sun.proxy.$Proxy221.executeUpdate(Unknown Source)
	at com.sun.gjc.spi.base.PreparedStatementWrapper.executeUpdate(PreparedStatementWrapper.java:125)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeDirectNoSelect(DatabaseAccessor.java:890)
	... 171 more
]]

[2017-06-01T11:57:36.558-0400] [glassfish 4.1] [WARNING] [AS-EJB-00056] [javax.enterprise.ejb.container] [tid: _ThreadID=102 _ThreadName=http-listener-1(2)] [timeMillis: 1496332656558] [levelValue: 900] [[
  A system exception occurred during an invocation on EJB DataverseRoleServiceBean, method: public java.util.List edu.harvard.iq.dataverse.DataverseRoleServiceBean.directRoleAssignments(edu.harvard.iq.dataverse.DvObject)]]

[2017-06-01T11:57:36.559-0400] [glassfish 4.1] [WARNING] [] [javax.enterprise.ejb.container] [tid: _ThreadID=102 _ThreadName=http-listener-1(2)] [timeMillis: 1496332656559] [levelValue: 900] [[
  
javax.ejb.TransactionRolledbackLocalException: Exception thrown from bean
	at com.sun.ejb.containers.EJBContainerTransactionManager.checkExceptionClientTx(EJBContainerTransactionManager.java:662)
	at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:507)
	at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566)
	at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074)
	at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
	at com.sun.proxy.$Proxy462.directRoleAssignments(Unknown Source)
	at edu.harvard.iq.dataverse.__EJB31_Generated__DataverseRoleServiceBean__Intf____Bean__.directRoleAssignments(Unknown Source)
	at edu.harvard.iq.dataverse.engine.command.impl.DestroyDatasetCommand.executeImpl(DestroyDatasetCommand.java:76)
	at edu.harvard.iq.dataverse.engine.command.AbstractVoidCommand.execute(AbstractVoidCommand.java:29)
	at edu.harvard.iq.dataverse.engine.command.AbstractVoidCommand.execute(AbstractVoidCommand.java:13)
	at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:207)
	at sun.reflect.GeneratedMethodAccessor256.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
	at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
	at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
	at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
	at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
	at sun.reflect.GeneratedMethodAccessor106.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
	at sun.reflect.GeneratedMethodAccessor108.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
	at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
	at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
	at com.sun.proxy.$Proxy502.submit(Unknown Source)
	at edu.harvard.iq.dataverse.__EJB31_Generated__EjbDataverseEngine__Intf____Bean__.submit(Unknown Source)
	at edu.harvard.iq.dataverse.api.AbstractApiBean.execCommand(AbstractApiBean.java:411)
	at edu.harvard.iq.dataverse.api.Datasets.lambda$destroyDataset$101(Datasets.java:212)
	at edu.harvard.iq.dataverse.api.AbstractApiBean.response(AbstractApiBean.java:470)
	at edu.harvard.iq.dataverse.api.Datasets.destroyDataset(Datasets.java:211)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171)
	at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103)
	at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:271)
	at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
	at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
	at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
	at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254)
	at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028)
	at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:372)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:381)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:344)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:221)
	at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:205)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at edu.harvard.iq.dataverse.api.ApiBlockingFilter.doFilter(ApiBlockingFilter.java:162)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:30)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:873)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:739)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:575)
	at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:546)
	at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:428)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:378)
	at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:34)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
	at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
	at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
	at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282)
	at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
	at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
	at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
	at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
	at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
	at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
	at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
	at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
	at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
	at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
	at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
	at java.lang.Thread.run(Thread.java:745)
Caused by: javax.persistence.PersistenceException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset"
  Detail: Key (id)=(580) is still referenced from table "dataset".
Error Code: 0
Call: DELETE FROM DVOBJECT WHERE (ID = ?)
	bind => [1 parameter bound]
Query: DeleteObjectQuery([DataFile id:580 name:null])
	at org.eclipse.persistence.internal.jpa.EntityManagerImpl.flush(EntityManagerImpl.java:868)
	at org.eclipse.persistence.internal.jpa.QueryImpl.performPreQueryFlush(QueryImpl.java:963)
	at org.eclipse.persistence.internal.jpa.QueryImpl.executeReadQuery(QueryImpl.java:207)
	at org.eclipse.persistence.internal.jpa.QueryImpl.getResultList(QueryImpl.java:469)
	at edu.harvard.iq.dataverse.DataverseRoleServiceBean.directRoleAssignments(DataverseRoleServiceBean.java:225)
	at sun.reflect.GeneratedMethodAccessor279.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
	at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
	at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
	at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
	at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
	at sun.reflect.GeneratedMethodAccessor106.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
	at sun.reflect.GeneratedMethodAccessor108.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
	at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
	at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
	... 115 more
Caused by: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset"
  Detail: Key (id)=(580) is still referenced from table "dataset".
Error Code: 0
Call: DELETE FROM DVOBJECT WHERE (ID = ?)
	bind => [1 parameter bound]
Query: DeleteObjectQuery([DataFile id:580 name:null])
	at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:340)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.processExceptionForCommError(DatabaseAccessor.java:1611)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeDirectNoSelect(DatabaseAccessor.java:898)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeNoSelect(DatabaseAccessor.java:962)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:631)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:558)
	at org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:2002)
	at org.eclipse.persistence.sessions.server.ClientSession.executeCall(ClientSession.java:298)
	at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
	at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.deleteObject(DatasourceCallQueryMechanism.java:203)
	at org.eclipse.persistence.internal.queries.StatementQueryMechanism.deleteObject(StatementQueryMechanism.java:104)
	at org.eclipse.persistence.queries.DeleteObjectQuery.executeDatabaseQuery(DeleteObjectQuery.java:218)
	at org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:899)
	at org.eclipse.persistence.queries.DatabaseQuery.executeInUnitOfWork(DatabaseQuery.java:798)
	at org.eclipse.persistence.queries.ObjectLevelModifyQuery.executeInUnitOfWorkObjectLevelModifyQuery(ObjectLevelModifyQuery.java:108)
	at org.eclipse.persistence.queries.DeleteObjectQuery.executeInUnitOfWorkObjectLevelModifyQuery(DeleteObjectQuery.java:119)
	at org.eclipse.persistence.queries.ObjectLevelModifyQuery.executeInUnitOfWork(ObjectLevelModifyQuery.java:85)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.internalExecuteQuery(UnitOfWorkImpl.java:2896)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1804)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1786)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1737)
	at org.eclipse.persistence.internal.sessions.CommitManager.deleteAllObjects(CommitManager.java:336)
	at org.eclipse.persistence.internal.sessions.CommitManager.deleteAllObjects(CommitManager.java:290)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitToDatabase(UnitOfWorkImpl.java:1444)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitToDatabaseWithPreBuiltChangeSet(UnitOfWorkImpl.java:1587)
	at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.writeChanges(RepeatableWriteUnitOfWork.java:452)
	at org.eclipse.persistence.internal.jpa.EntityManagerImpl.flush(EntityManagerImpl.java:863)
	... 147 more
Caused by: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset"
  Detail: Key (id)=(580) is still referenced from table "dataset".
	at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2101)
	at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1834)
	at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:255)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:510)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:386)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.executeUpdate(AbstractJdbc2Statement.java:332)
	at sun.reflect.GeneratedMethodAccessor232.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.postgresql.ds.jdbc23.AbstractJdbc23PooledConnection$StatementHandler.invoke(AbstractJdbc23PooledConnection.java:453)
	at com.sun.proxy.$Proxy221.executeUpdate(Unknown Source)
	at com.sun.gjc.spi.base.PreparedStatementWrapper.executeUpdate(PreparedStatementWrapper.java:125)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeDirectNoSelect(DatabaseAccessor.java:890)
	... 171 more
]]

[2017-06-01T11:57:36.567-0400] [glassfish 4.1] [SEVERE] [] [edu.harvard.iq.dataverse.api.AbstractApiBean] [tid: _ThreadID=102 _ThreadName=http-listener-1(2)] [timeMillis: 1496332656567] [levelValue: 1000] [[
  Error while executing command edu.harvard.iq.dataverse.engine.command.impl.DestroyDatasetCommand@3f6c40cd
edu.harvard.iq.dataverse.engine.command.exception.CommandException: Command edu.harvard.iq.dataverse.engine.command.impl.DestroyDatasetCommand@3f6c40cd failed: null
	at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:211)
	at sun.reflect.GeneratedMethodAccessor256.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
	at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
	at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
	at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
	at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
	at sun.reflect.GeneratedMethodAccessor106.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
	at sun.reflect.GeneratedMethodAccessor108.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
	at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
	at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
	at com.sun.proxy.$Proxy502.submit(Unknown Source)
	at edu.harvard.iq.dataverse.__EJB31_Generated__EjbDataverseEngine__Intf____Bean__.submit(Unknown Source)
	at edu.harvard.iq.dataverse.api.AbstractApiBean.execCommand(AbstractApiBean.java:411)
	at edu.harvard.iq.dataverse.api.Datasets.lambda$destroyDataset$101(Datasets.java:212)
	at edu.harvard.iq.dataverse.api.AbstractApiBean.response(AbstractApiBean.java:470)
	at edu.harvard.iq.dataverse.api.Datasets.destroyDataset(Datasets.java:211)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:151)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:171)
	at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)
	at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:104)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:387)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:331)
	at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:103)
	at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:271)
	at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
	at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
	at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
	at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:297)
	at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:254)
	at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1028)
	at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:372)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:381)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:344)
	at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:221)
	at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:205)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at edu.harvard.iq.dataverse.api.ApiBlockingFilter.doFilter(ApiBlockingFilter.java:162)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:30)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:873)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:739)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:575)
	at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:546)
	at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:428)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:378)
	at edu.harvard.iq.dataverse.api.ApiRouter.doFilter(ApiRouter.java:34)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
	at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
	at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
	at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282)
	at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459)
	at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167)
	at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201)
	at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175)
	at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235)
	at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133)
	at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112)
	at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
	at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561)
	at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56)
	at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137)
	at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565)
	at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545)
	at java.lang.Thread.run(Thread.java:745)
Caused by: javax.ejb.TransactionRolledbackLocalException: Exception thrown from bean
	at com.sun.ejb.containers.EJBContainerTransactionManager.checkExceptionClientTx(EJBContainerTransactionManager.java:662)
	at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:507)
	at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566)
	at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074)
	at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)
	at com.sun.proxy.$Proxy462.directRoleAssignments(Unknown Source)
	at edu.harvard.iq.dataverse.__EJB31_Generated__DataverseRoleServiceBean__Intf____Bean__.directRoleAssignments(Unknown Source)
	at edu.harvard.iq.dataverse.engine.command.impl.DestroyDatasetCommand.executeImpl(DestroyDatasetCommand.java:76)
	at edu.harvard.iq.dataverse.engine.command.AbstractVoidCommand.execute(AbstractVoidCommand.java:29)
	at edu.harvard.iq.dataverse.engine.command.AbstractVoidCommand.execute(AbstractVoidCommand.java:13)
	at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:207)
	... 108 more
Caused by: javax.persistence.PersistenceException: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset"
  Detail: Key (id)=(580) is still referenced from table "dataset".
Error Code: 0
Call: DELETE FROM DVOBJECT WHERE (ID = ?)
	bind => [1 parameter bound]
Query: DeleteObjectQuery([DataFile id:580 name:null])
	at org.eclipse.persistence.internal.jpa.EntityManagerImpl.flush(EntityManagerImpl.java:868)
	at org.eclipse.persistence.internal.jpa.QueryImpl.performPreQueryFlush(QueryImpl.java:963)
	at org.eclipse.persistence.internal.jpa.QueryImpl.executeReadQuery(QueryImpl.java:207)
	at org.eclipse.persistence.internal.jpa.QueryImpl.getResultList(QueryImpl.java:469)
	at edu.harvard.iq.dataverse.DataverseRoleServiceBean.directRoleAssignments(DataverseRoleServiceBean.java:225)
	at sun.reflect.GeneratedMethodAccessor279.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)
	at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)
	at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786)
	at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)
	at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
	at sun.reflect.GeneratedMethodAccessor106.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
	at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
	at sun.reflect.GeneratedMethodAccessor108.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)
	at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)
	at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)
	at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758)
	at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746)
	at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
	... 115 more
Caused by: Exception [EclipseLink-4002] (Eclipse Persistence Services - 2.5.2.v20140319-9ad6abd): org.eclipse.persistence.exceptions.DatabaseException
Internal Exception: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset"
  Detail: Key (id)=(580) is still referenced from table "dataset".
Error Code: 0
Call: DELETE FROM DVOBJECT WHERE (ID = ?)
	bind => [1 parameter bound]
Query: DeleteObjectQuery([DataFile id:580 name:null])
	at org.eclipse.persistence.exceptions.DatabaseException.sqlException(DatabaseException.java:340)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.processExceptionForCommError(DatabaseAccessor.java:1611)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeDirectNoSelect(DatabaseAccessor.java:898)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeNoSelect(DatabaseAccessor.java:962)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.basicExecuteCall(DatabaseAccessor.java:631)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeCall(DatabaseAccessor.java:558)
	at org.eclipse.persistence.internal.sessions.AbstractSession.basicExecuteCall(AbstractSession.java:2002)
	at org.eclipse.persistence.sessions.server.ClientSession.executeCall(ClientSession.java:298)
	at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.executeCall(DatasourceCallQueryMechanism.java:242)
	at org.eclipse.persistence.internal.queries.DatasourceCallQueryMechanism.deleteObject(DatasourceCallQueryMechanism.java:203)
	at org.eclipse.persistence.internal.queries.StatementQueryMechanism.deleteObject(StatementQueryMechanism.java:104)
	at org.eclipse.persistence.queries.DeleteObjectQuery.executeDatabaseQuery(DeleteObjectQuery.java:218)
	at org.eclipse.persistence.queries.DatabaseQuery.execute(DatabaseQuery.java:899)
	at org.eclipse.persistence.queries.DatabaseQuery.executeInUnitOfWork(DatabaseQuery.java:798)
	at org.eclipse.persistence.queries.ObjectLevelModifyQuery.executeInUnitOfWorkObjectLevelModifyQuery(ObjectLevelModifyQuery.java:108)
	at org.eclipse.persistence.queries.DeleteObjectQuery.executeInUnitOfWorkObjectLevelModifyQuery(DeleteObjectQuery.java:119)
	at org.eclipse.persistence.queries.ObjectLevelModifyQuery.executeInUnitOfWork(ObjectLevelModifyQuery.java:85)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.internalExecuteQuery(UnitOfWorkImpl.java:2896)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1804)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1786)
	at org.eclipse.persistence.internal.sessions.AbstractSession.executeQuery(AbstractSession.java:1737)
	at org.eclipse.persistence.internal.sessions.CommitManager.deleteAllObjects(CommitManager.java:336)
	at org.eclipse.persistence.internal.sessions.CommitManager.deleteAllObjects(CommitManager.java:290)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitToDatabase(UnitOfWorkImpl.java:1444)
	at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitToDatabaseWithPreBuiltChangeSet(UnitOfWorkImpl.java:1587)
	at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.writeChanges(RepeatableWriteUnitOfWork.java:452)
	at org.eclipse.persistence.internal.jpa.EntityManagerImpl.flush(EntityManagerImpl.java:863)
	... 147 more
Caused by: org.postgresql.util.PSQLException: ERROR: update or delete on table "dvobject" violates foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset"
  Detail: Key (id)=(580) is still referenced from table "dataset".
	at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2101)
	at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1834)
	at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:255)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:510)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:386)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.executeUpdate(AbstractJdbc2Statement.java:332)
	at sun.reflect.GeneratedMethodAccessor232.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.postgresql.ds.jdbc23.AbstractJdbc23PooledConnection$StatementHandler.invoke(AbstractJdbc23PooledConnection.java:453)
	at com.sun.proxy.$Proxy221.executeUpdate(Unknown Source)
	at com.sun.gjc.spi.base.PreparedStatementWrapper.executeUpdate(PreparedStatementWrapper.java:125)
	at org.eclipse.persistence.internal.databaseaccess.DatabaseAccessor.executeDirectNoSelect(DatabaseAccessor.java:890)
	... 171 more
]]
@djbrooke djbrooke added this to the 4.6.2 - Tabular Mapping milestone Jun 1, 2017
@landreev landreev self-assigned this Jun 1, 2017
@landreev landreev added in progress and removed ready labels Jun 1, 2017
@pdurbin pdurbin changed the title Internal Server Error (500) when destroying a dataset: foreign key constraint foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset" Internal Server Error (500) when destroying a dataset: foreign key constraint "fk_dataset_thumbnailfile_id" on table "dataset" Jun 1, 2017
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landreev commented Jun 1, 2017

pushed in a one line fix. making a pull request.

@landreev landreev mentioned this issue Jun 1, 2017
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@landreev landreev removed their assignment Jun 1, 2017
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landreev commented Jun 1, 2017

PR: #3876

@pdurbin pdurbin self-assigned this Jun 1, 2017
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pdurbin commented Jun 1, 2017

As of 0ecdd35 all of the tests in DatasetsIT.java pass. Looks like a good fix. Approved. I'll move this to QA.

@kcondon kcondon assigned kcondon and unassigned pdurbin Jun 1, 2017
@kcondon kcondon closed this as completed Jun 1, 2017
@kcondon kcondon removed the Status: QA label Jun 1, 2017
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