DESCRIPTION

Package: BIGDAWG
Type: Package
Title: Case-Cotrol Analysis of Multi-Allelic Loci
Version: 3.0.8
Date: 2023-09-08
Author: Derek Pappas <djpappas75@gmail.com>, Steve Mack <Steven.Mack@ucsf.edu>, Jill Hollenbach <Jill.Hollenbach@ucsf.edu>
Maintainer: Steve Mack <Steven.Mack@ucsf.edu>
URL: http://tools.immunogenomics.org/, https://github.com/IgDAWG/BIGDAWG
BugReports: https://github.com/IgDAWG/BIGDAWG/issues
Description: Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.
License: GPL (>= 3)
LazyData: True
Depends: R (>= 4.0.0)
Imports: XML, httr, haplo.stats, parallel
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Encoding: UTF-8