Skip to content

Latest commit

 

History

History
134 lines (117 loc) · 5.26 KB

data_format.md

File metadata and controls

134 lines (117 loc) · 5.26 KB
Raw

Data Format

The following documents the data accessible on Zenodo here: full / permissively licensed subset

Overview

unarXive is distributed as an XZ compressed TAR archive. You can unpack it using either of the following methods.

  • On the command line using tar -xJf.
  • Graphically with 7zip.

Each decompressed file arXiv_src_<yy><mm>_<num>.jsonl is in the JSON Lines format. This means each line is a JSON object and can, for example, be loaded in Python with json.loads(some_line).

Papers are represented as shown in the example below, which is an excerpt from the paper 2105.05862 from the file arXiv_src_2105_034.jsonl. A full documentation of data fields is given further down.

Paper object

{
  "paper_id": "2105.05862",
  "_pdf_hash": None,
  "_source_hash": "b7d5f27b5c8abc3bd8a44d875899fdc0d945a604",
  "_source_name": "2105.05862.gz",
  "metadata": {...},
  "discipline": "Physics",
  "abstract": {...},
  "body_text": [...],
  "bib_entries": {...},
  "ref_entries": {...}
}

One example paragraph in body_text is:

{
  "section": "Memory wave form",
  "sec_number": "2.1",
  "sec_type": "subsection",
  "content_type": "paragraph",
  "text": "The gauge choice leading us to this solution does not fix "
          "completely all the gauge freedom and an additional constraint "
          "should be imposed to leave only the physical degrees of freedom. "
          "This is done by projecting the source tensor {{formula:7fd88bcd-"
          "9013-433d-9756-b874472530d9}}  into its transverse-traceless (TT) "
          "components (see for example {{cite:80dbb6c8b9c12f561a8e585faceac5f"
          "4e104d60d}}). Doing this and without loss of generality, we will "
          "use the following very well known ansatz for the source term "
          "proposed in {{cite:bc9a8ca19785627a087ae0c01abe155c22388e16}}\n",
  "cite_spans": [...],
  "ref_spans": [...]
}

where {{formula:7fd88bcd-9013-433d-9756-b874472530d9}} refers in ref_entries to the mathematical notation

{
  "latex": "S_{\\mu \\nu }",
  "type": "formula"
}

and {{cite:bc9a8ca19785627a087ae0c01abe155c22388e16}}, for example, refers in bib_entries to the bibliographical reference

{
  "bib_entry_raw": "R. Epstein, The Generation of Gravitational Radiation by "
                   "Escaping Supernova Neutrinos, Astrophys. J. 223 (1978) "
                   "1037.",
  "contained_arXiv_ids": [],
  "contained_links": [
    {
      "url": "https://doi.org/10.1086/156337",
      "text": "Astrophys. J. 223 (1978) 1037.",
      "start": 87,
      "end": 117
    }
  ],
  "discipline": "Physics",
  "ids" {...}
}

Data Format

Papers (JSON objects saved as a single line in a JSONL file) have the following format.

  • paper_id: arXiv ID of the paper
  • _pdf_hash: always None
  • _source_hash: SHA1 hash of the arXiv source file
  • _source_name: name of the arXiv source file
  • metadata: paper metadata from kaggle.com/datasets/Cornell-University/arxiv
  • discipline: scientific discipline of the paper
  • abstract: paper abstract copied from metadata
  • body_text: list of paper content sections (paragraphs, listings, etc.)
    • section: section name
    • sec_number: section number
    • sec_type: section type (section, subsection, etc.)
    • content_type: content type (paragraph, listing, etc.)
    • text: text content
    • cite_spans: list of citation markers
      • start: starting character offset in text
      • end: ending character offset in text
      • text: surface text
      • ref_id: dictionary key for linked content in bib_entries
    • ref_spans: list of referenced non-textual content (figures, formulas, etc.)
      • start: starting character offset in text
      • end: ending character offset in text
      • text: surface text
      • ref_id: dictionary key for linked content in ref_entries
  • bib_entries: list of bibliographic references
    • bib_entry_raw: raw bibliographic reference string
    • contained_arXiv_ids: list of linked arXiv papers
      • id: ID of linked arXiv paper
      • text: text segment in reference that the link was attached to
      • start: starting character offset in bib_entry_raw
      • end: ending character offset in bib_entry_raw
    • contained_links: list of embedded links
      • url: URL of link
      • text: text segment in reference that the link was attached to
      • start: starting character offset in bib_entry_raw
      • end: ending character offset in bib_entry_raw
    • discipline: scientific discipline of the cited paper
    • ids: matched identifiers of referenced paper
      • open_alex_id: referenced paper’s OpenAlex ID
      • sem_open_alex_id: referenced paper’s SemOpenAlex ID
      • pubmed_id: referenced paper’s PubMed ID
      • pmc_id: referenced paper’s PMC ID
      • doi: referenced paper’s DOI
  • ref_entries: list of non-textual content (figures, formulas, etc.)
    • type: content type
    • caption: table/figure caption (if type is table or figure)
    • latex: content of LaTeX math mode (if type is formula)