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format for --freq-file FILE? #28

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stephenturner opened this issue Oct 11, 2018 · 2 comments
Closed

format for --freq-file FILE? #28

stephenturner opened this issue Oct 11, 2018 · 2 comments

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@stephenturner
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What's the format for the --freq-file FILE, a file containing population allele frequencies to use in kinship calculation

thanks!
@jaredo
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jaredo commented Oct 11, 2018

It expects a VCF with INFO/af_tag populated, this defaults to AF but you can change it with the -a argument.

cheers,

Jared

@stephenturner
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thanks

@stephenturner stephenturner mentioned this issue Oct 22, 2018
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@jaredo @stephenturner