s2b_example_config.json

{
    "study_name": "Aneravimm",
    "subjects": ["VS_Aneravimm_010", "VS_Aneravimm_011"],
    "data_to_bids": [
            {"datasetName": "t1_mprage_sag_p2_iso", "bidsDir": "anat", "bidsName": "acq-mprage_T1w"},
    {"datasetName": "t2_tse_HR_cor_MTL", "bidsDir": "anat", "bidsName": "acq-hr_T2w"},
    {"datasetName": "Resting State_bold AP 1.6mm HIPP", "bidsDir": "func", "bidsName": "task-restingState_dir-AP_bold"},
    {"datasetName": "Diff cusp66 b3000 AP 1.5mm", "bidsDir": "dwi", "bidsName": "acq-b3000_dir-AP_dwi"},
    {"datasetName": "Diff cusp66 b0 PA 1.5mm", "bidsDir": "dwi", "bidsName": "acq-b0_dir-AP_dwi"},
    {"datasetName": "Diff cusp66 b0 PA 1.5mm", "bidsDir": "dwi", "bidsName": "acq-b0_dir-PA_dwi"}
  ],
    "dcm2niix": "/home/alpron/softs/miniconda3/envs/test-env/bin/dcm2niix",
    "dcm2niix_options_comment": "dcm2niix configuration options in the nipype format (see https://nipype.readthedocs.io/en/latest/api/generated/nipype.interfaces.dcm2nii.html)",
    "dcm2niix_options": {
        "bids_format": true,
        "anon_bids": true,
        "compress": "y",
        "compression": 5,
        "crop": false,
        "has_private": false,
        "ignore_deriv": false,
        "single_file": false,
        "verbose": false
    },
    "find_and_replace_subject": [
        {"find": "VS_Aneravimm_", "replace": "VS"},
        {"find": "Vs_Aneravimm_", "replace": "VS"}
    ]
}