packages.yaml

packages:
  #
  all:
    providers:
      gl: [opengl]
      glu: [openglu]
      jpeg: [libjpeg-turbo]
      pkgconfig: [pkg-config]
      yacc: [bison]
      zlib-api: [zlib-ng]
  #
  awscli-v2:
    require: '~examples'
  bacio:
    require: '@2.4.1'
  bison:
    require: '@3.4:'
  # 1.85 incompatible with ecflow@5.11.4 - use latest 'good version'
  boost:
    require:
    - '@1.84 ~atomic +chrono +date_time +exception +filesystem ~graph ~iostreams ~locale ~log ~math ~mpi ~numpy +pic +program_options +python ~random +regex +serialization ~signals +system +test +thread +timer ~wave cxxstd=17 visibility=hidden'
  bufr:
    require: '@12.1.0 +python'
  bufr-query:
    require: '@0.0.2 +python'
  cairo:
    require: '+pic'
  cdo:
    require: '@2.3.0 ~openmp'
  cmake:
    version: ['3.27.9']
    require: '+ownlibs'
  # Attention - when updating also check the various jcsda-emc-bundles env packages
  crtm:
    require: '+fix'
  ecbuild:
    require: '@3.7.2'
  eccodes:
    require: '@2.33.0 +png +tools'
  ecflow:
    require:
    - '@5.11.4 +ui'
  eckit:
    require: '@1.27.0 linalg=eigen,lapack compression=lz4,bzip2'
  ecmwf-atlas:
    require: '@0.38.1 +fckit +trans +tesselation +fftw'
  ectrans:
    require:
    - '@1.2.0'
  eigen:
    require: '@3.4.0'
  # Attention - when updating the version also check the common modules.yaml
  # config and update the projections for lmod/tcl.
  # Also, check the acorn and derecho site configs which have esmf modifications.
  esmf:
    require:
      - '~xerces ~pnetcdf +shared +external-parallelio'
      - any_of: ['@=8.6.1 snapshot=none', '@=8.7.0b11 snapshot=b11']
      - any_of: ['fflags="-fp-model precise" cxxflags="-fp-model precise"']
        when: "%intel"
        message: "Extra ESMF compile options for Intel"
      #- any_of: ['']
      #  when: "%gcc"
      #  message: "Extra ESMF compile options for GCC"
      #- any_of: ['']
      #  when: "%apple-clang"
      #  message: "Extra ESMF compile options for GCC"
  fckit:
    require: '@0.11.0 +eckit'
  fftw:
    require: '@3.3.10'
  fiat:
    require: '@1.2.0'
  flex:
    # Pin version to avoid duplicates
    require: '@2.6.4'
  fms:
    require:
    - '@2024.02'
    - 'precision=32,64 +quad_precision +gfs_phys +openmp +pic constants=GFS build_type=Release +deprecated_io'
  fontconfig:
    require: '+pic'
  freetype:
    require: '+pic'
  g2:
    require:
    - '@3.5.1'
  g2c:
    require: '@1.6.4'
  g2tmpl:
    require:
    - '@1.13.0'
  gcc-runtime:
    require: '%gcc'
  gfsio:
    require: '@1.4.1'
  #git-lfs:
    # Assume git-lfs is provided, hard to install
    # because of dependencies on go/go-bootstrap.
    # Note: Uncommenting this entry will break
    # the container builds.
    #require: '@2.11.0'
  grib-util:
    require: '@1.4.0'
  gsibec:
    require:
    - '@1.2.1'
  gsi-ncdiag:
    require: '@1.1.2'
  gsl-lite:
    require: '@0.37.0'
  hdf:
    require: '@4.2.15 +external-xdr ~fortran ~netcdf'
  hdf5:
    require: '@1.14.3 +hl +fortran +mpi +threadsafe ~szip'
  # Newer versions of hdf-eos2 require manual downloading, avoid
  hdf-eos2:
    require: '@2.20v1.00'
  ip:
    require: '@5.0.0 precision=4,d,8'
  ip2:
    require: '@1.1.2'
  jasper:
    require: '@2.0.32'
  jedi-cmake:
    require: '@1.4.0'
  landsfcutil:
    require: '@2.4.1'
  libjpeg-turbo:
    require: '@2.1.0'
  libpng:
    require: '@1.6.37 +pic'
  # Newest version of magics needed for oneapi compilers
  magics:
    require: "@4.15.3:"
  mapl:
    require: '@2.46.3 ~shared ~f2py'
    variants: '+pflogger'
  # If making changes here, also check the Discover site configs and the CI workflows
  met:
    require: '@11.1.1 +python +grib2'
  metplus:
    require: '@5.1.0'
  metis:
    require: '+int64 +real64'
  mpich:
    require: '~hwloc'
  nco:
    require: '@5.1.6 ~doc'
  # ncview - when adding information here, also check Orion
  # and Discover site configs
  nemsio:
    require: '@2.5.4'
  nemsiogfs:
    require: '@2.5.3'
  nccmp:
    require: '@1.9.0.1'
  ncio:
    require: '@1.1.2'
  netcdf-c:
    # If using 4.9.1, turn off byterange variant to fix compile error: ~byterange
    require: '@4.9.2 +dap +mpi ~parallel-netcdf ~szip build_system=autotools'
  netcdf-cxx4:
    require: '@4.3.1'
  netcdf-fortran:
    require: '@4.6.1'
  # ninja - when adding information here, also check Discover site config
  odc:
    require: '@1.5.2 ~fortran'
  openblas:
    require: '@0.3.24 +noavx512'
  openmpi:
    require: '~internal-hwloc +two_level_namespace'
  openssl:
    require: '+shared'
  p4est:
    require: '@2.8'
  parallelio:
    require: '@2.6.2 +pnetcdf'
  parallel-netcdf:
    require: '@1.12.3'
  pflogger:
    require: '+mpi'
  pixman:
    require: '+pic'
  prod-util:
    require: '@2.1.1'
  proj:
    require: '~tiff'
  python:
    require: '@3.11.7'
  py-attrs:
    # https://github.com/JCSDA/spack-stack/issues/740
    require: '@21.4.0'
  py-cartopy:
    require: '+plotting'
  py-cryptography:
    require: '+rust_bootstrap'
  # Introduced in https://github.com/JCSDA/spack-stack/pull/894, pin py-cython
  # to avoid duplicate packages being built (cylc dependencies soft-want @3:)
  py-cython:
    require: '@0.29.36'
  # As long as we need the "delayed" variant for py-dask,
  # we are restricted to version 2021.03.0 (last one that has it)
  # and newer than 2021.01.0 because of these issues:
  # https://github.com/JCSDA/spack-stack/issues/1216
  # https://github.com/pydata/xarray/issues/8917
  py-dask:
    require: '@2021.3.0'
  # To avoid duplicate packages
  py-flit-core:
    require: '@3.8.0'
  py-h5py:
    require: '~mpi'
  ## To avoid duplicate packages
  #py-jinja2:
  #  require: '@3.1.2'
  # https://github.com/JCSDA/spack-stack/issues/1276
  py-matplotlib:
     require: '@3.7.4'
  py-meson-python:
     require: '@0.15.0'
  # Comment out for now until build problems are solved
  # https://github.com/jcsda/spack-stack/issues/522
  # see also ewok-env virtual package and container
  # README.md
  #py-mysql-connector-python:
  #  require: '@8.0.32'
  py-netcdf4:
    require: '@1.5.8 ~mpi'
  # py-numpy@1.26 causes many build problems with older Python packages
  # also check Nautilus site config when making changes here
  # https://github.com/JCSDA/spack-stack/issues/1276
  py-numpy:
    require:
    - '@:1.23.5'
  py-pandas:
    require: '+excel'
  py-pybind11:
    require: '@2.11.0'
  # Pin the py-setuptools version to avoid duplicate Python packages
  py-setuptools:
    require: '@63.4.3'
  py-setuptools-rust:
    require: '+rust_bootstrap'
  py-shapely:
    require: '@1.8.0'
  py-torch:
    require: '+custom-protobuf ~mkldnn'
  # To avoid duplicate packages
  py-urllib3:
    require: '@1.26.12'
  qt:
    require: '@5'
  scotch:
    require: '@7.0.4 +mpi+metis~shared~threads~mpi_thread+noarch'
  sfcio:
    require: '@1.4.1'
  shumlib:
    require: '@macos_clang_linux_intel_port'
  sigio:
    require: '@2.3.2'
  sp:
    require: '@2.5.0 precision=4,d,8'
  udunits:
    require: '@2.2.28'
  ufs-utils:
    require: '@1.13.0'
  # Note - we can remove upp from stack at some point?
  upp:
    require: '@10.0.10'
  # Need extradeps for grib-utils, enable by default to avoid duplicate packages
  w3emc:
    require: '@2.10.0 precision=4,d,8 +extradeps'
  w3nco:
    require: '@2.4.1'
  wgrib2:
    require:
    - '@3.1.1'
  wrf-io:
    require: '@1.2.0'
  zstd:
    require: '@1.5.2 +programs'