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csa_bruteforce_params.ini
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[DEFAULT]
input_dir = ./csa_data/raw_data
csa_outdir = ./bruteforce_output
y_col_name = auc
source_datasets = ["gCSI", "CCLE", "GDSCv1", "GDSCv2", "CTRPv2"]
target_datasets = ["gCSI", "CCLE", "GDSCv1", "GDSCv2", "CTRPv2"]
split_nums = []
model_name = PathDSP
only_cross_study = False
epochs = 800
uses_cuda_name = True
### Source and target data sources
## Set 1 - full analysis
#source_datasets = ["CCLE", "CTRPv2", "gCSI", "GDSCv1", "GDSCv2"]
#target_datasets = ["CCLE", "CTRPv2", "gCSI", "GDSCv1", "GDSCv2"]
## Set 2 - smaller datasets
# source_datasets = ["CCLE", "gCSI", "GDSCv1", "GDSCv2"]
# target_datasets = ["CCLE", "gCSI", "GDSCv1", "GDSCv2"]
# source_datasets = ["CCLE", "gCSI", "GDSCv2"]
# target_datasets = ["CCLE", "gCSI", "GDSCv2"]
# source_datasets = ["CCLE", "GDSCv1"]
# target_datasets = ["CCLE", "gCSI", "GDSCv1", "GDSCv2"]
## Set 3 - full analysis for a single source
# source_datasets = ["CCLE"]
# source_datasets = ["CTRPv2"]
# target_datasets = ["CCLE", "CTRPv2", "gCSI", "GDSCv1", "GDSCv2"]
# target_datasets = ["CCLE", "gCSI", "GDSCv1", "GDSCv2"]
# target_datasets = ["CCLE", "gCSI", "GDSCv2"]
## Set 4 - same source and target
# source_datasets = ["CCLE"]
# target_datasets = ["CCLE"]
## Set 5 - single source and target
# source_datasets = ["GDSCv1"]
# target_datasets = ["CCLE"]
## Splits
#split_nums = [] # all splits
# split_nums = [0]
# split_nums = [4, 7]
# split_nums = [1, 4, 7]
# split_nums = [1, 3, 5, 7, 9]
[Preprocess]
[Train]
[Infer]