test.yml

name: "tests"

on: 
    push:
        branches:
          - '**'
    pull_request:
        branches:
          - '**'

jobs:
  tests:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -el {0}
    steps:
    - uses: actions/checkout@v4
    - uses: conda-incubator/setup-miniconda@v3
      with:
        activate-environment: anaconda-client-env
        environment-file: etc/environment.yml
        python-version: 3.9
        condarc-file: etc/condarc.yml
        auto-activate-base: false
    - run: |
        conda info
        conda list

    - name: Test with pytest
      run: |
        python -m pip install --upgrade pip
        pip install .
        pip install .[test]
        pytest --cov=./ --cov-report=xml

    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v3
      env:
        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
      with:
        file: ./coverage.xml
        fail_ci_if_error: true