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Copy file name to clipboardExpand all lines: LICENSE.md
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1. Copyright and Related Rights. A Work made available under CC0 may be protected by copyright and related or neighboring rights ("Copyright and Related Rights"). Copyright and Related Rights include, but are not limited to, the following:
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i. the right to reproduce, adapt, distribute, perform, display, communicate, and translate a Work;
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ii. moral rights retained by the original author(s) and/or performer(s);
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iii. publicity and privacy rights pertaining to a person's image or likeness depicted in a Work;
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vi. database rights (such as those arising under Directive 96/9/EC of the European Parliament and of the Council of 11 March 1996 on the legal protection of databases, and under any national implementation thereof, including any amended or successor version of such directive); and
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vii. other similar, equivalent or corresponding rights throughout the world based on applicable law or treaty, and any national implementations thereof.
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2. Waiver. To the greatest extent permitted by, but not in contravention of, applicable law, Affirmer hereby overtly, fully, permanently, irrevocably and unconditionally waives, abandons, and surrenders all of Affirmer's Copyright and Related Rights and associated claims and causes of action, whether now known or unknown (including existing as well as future claims and causes of action), in the Work (i) in all territories worldwide, (ii) for the maximum duration provided by applicable law or treaty (including future time extensions), (iii) in any current or future medium and for any number of copies, and (iv) for any purpose whatsoever, including without limitation commercial, advertising or promotional purposes (the "Waiver"). Affirmer makes the Waiver for the benefit of each member of the public at large and to the detriment of Affirmer's heirs and successors, fully intending that such Waiver shall not be subject to revocation, rescission, cancellation, termination, or any other legal or equitable action to disrupt the quiet enjoyment of the Work by the public as contemplated by Affirmer's express Statement of Purpose.
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3. Public License Fallback. Should any part of the Waiver for any reason be judged legally invalid or ineffective under applicable law, then the Waiver shall be preserved to the maximum extent permitted taking into account Affirmer's express Statement of Purpose. In addition, to the extent the Waiver is so judged Affirmer hereby grants to each affected person a royalty-free, non transferable, non sublicensable, non exclusive, irrevocable and unconditional license to exercise Affirmer's Copyright and Related Rights in the Work (i) in all territories worldwide, (ii) for the maximum duration provided by applicable law or treaty (including future time extensions), (iii) in any current or future medium and for any number of copies, and (iv) for any purpose whatsoever, including without limitation commercial, advertising or promotional purposes (the "License"). The License shall be deemed effective as of the date CC0 was applied by Affirmer to the Work. Should any part of the License for any reason be judged legally invalid or ineffective under applicable law, such partial invalidity or ineffectiveness shall not invalidate the remainder of the License, and in such case Affirmer hereby affirms that he or she will not (i) exercise any of his or her remaining Copyright and Related Rights in the Work or (ii) assert any associated claims and causes of action with respect to the Work, in either case contrary to Affirmer's express Statement of Purpose.
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4. Limitations and Disclaimers.
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a. No trademark or patent rights held by Affirmer are waived, abandoned, surrendered, licensed or otherwise affected by this document.
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b. Affirmer offers the Work as-is and makes no representations or warranties of any kind concerning the Work, express, implied, statutory or otherwise, including without limitation warranties of title, merchantability, fitness for a particular purpose, non infringement, or the absence of latent or other defects, accuracy, or the present or absence of errors, whether or not discoverable, all to the greatest extent permissible under applicable law.
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c. Affirmer disclaims responsibility for clearing rights of other persons that may apply to the Work or any use thereof, including without limitation any person's Copyright and Related Rights in the Work. Further, Affirmer disclaims responsibility for obtaining any necessary consents, permissions or other rights required for any use of the Work.
<ahref="./howto.html" class="sidebar-item-text sidebar-link active"><spanclass="chapter-number">2</span> <spanclass="chapter-title">How to X | Learning Resources</span></a>
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</div>
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</li>
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<ahref="./howto.html" class="sidebar-item-text sidebar-link"><spanclass="chapter-number">2</span> <spanclass="chapter-title">How to X | Learning Resources</span></a>
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<ahref="./howto.html" class="sidebar-item-text sidebar-link"><spanclass="chapter-number">2</span> <spanclass="chapter-title">How to X</span></a>
<ahref="./howto.html" class="sidebar-item-text sidebar-link"><spanclass="chapter-number">2</span> <spanclass="chapter-title">How to X | Learning Resources</span></a>
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<li><ahref="#stay-in-touch" id="toc-stay-in-touch" class="nav-link active" data-scroll-target="#stay-in-touch"><spanclass="toc-section-number">5.1</span> Stay in touch</a></li>
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<li><ahref="#ready-to-head-out" id="toc-ready-to-head-out" class="nav-link active" data-scroll-target="#ready-to-head-out"><spanclass="toc-section-number">5.1</span> Ready to head out?</a></li>
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<li><ahref="#stay-in-touch" id="toc-stay-in-touch" class="nav-link" data-scroll-target="#stay-in-touch"><spanclass="toc-section-number">5.2</span> Stay in touch</a></li>
<li><p><inputtype="checkbox" disabled="">If you have worked with us for ≥3mo, you will remain a part of <code>#the-continuum</code> channel on our Slack.</p></li>
Copy file name to clipboardExpand all lines: docs/search.json
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"objectID": "howto.html#get-started",
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"href": "howto.html#get-started",
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"title": "2 How to X | Learning Resources",
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"title": "2 How to X",
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"section": "2.1 Get started",
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"text": "2.1 Get started\nIf you are new to computational biology and R programming, join the #bioinfo-primers channel. Use the #help-x channels to ask for help/answer others’ questions on R/Py programming, shell scripting, version controlling, or anything else that’s general and not project-specific. Use the corresponding #proj-x channels for all project-related questions.\nCheck out the Slack tips in the pinned posts in #help-proj_management to get oriented since you are new to Slack (the channel used to be #howto-slack)!\nTo re-familiarize yourself with R/Python/Unix, check out these two resources in addition to Slack | CompBio gists and R-Ladies East Lansing. If you are new to R-Ladies East Lansing and Women+ Data Science, check them out and join Meetup and their Slack to remain apprised of upcoming events and to connect with the local R and data science communities.\n💡If you find other useful resources, please add them to this list (or share them with me)."
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"objectID": "howto.html#learn-r",
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"href": "howto.html#learn-r",
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"section": "2.2 Learn R",
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"text": "2.2 Learn R\nTo learn R, I would recommend getting started with the pinned posts in #courses-primers.\nA couple of helpful GitHub repositories - https://github.com/jananiravi/workshop-tidyverse (Intro to R's tidyverse package — very useful to learn right away) - Other R workshop materials from our R-Ladies East Lansing chapter: https://github.com/rladies-eastlansing - Interactive tutorials with learnr & swirl. - R for Genomics from Data Carpentry - R on HPC\n\nCoursera\n\nIntro to R programming and tidyverse\nData visualization and Dashboarding with R specialization\nGetting Started with Data Visualization in R\n… and more | explore by topic, duration, skill-level\n\n\n📌 Go-to books (also in pinned posts on Slack)\n\nR for Data Science (for tidyverse and such)\nHands-On Programming with R (for base R) Intro to Git, GitHub resources"
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"section": "2.3 Use VPN",
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"text": "2.3 Use VPN\nhttps://www.ucdenver.edu/offices/office-of-information-technology/software/how-do-i-use/vpn-and-remote-access"
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"section": "2.4 Learn Git/GitHub",
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"text": "2.4 Learn Git/GitHub\n\nhttps://happygitwithr.com/ Happy Git and GitHub for the useR (connecting git/GitHub w/ R)\nGit and GitHub learning resources from GitHub\nGit 101\nCoursera Intro to Git and GitHub course"
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"section": "2.5 Read/write/present",
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"text": "2.5 Read/write/present\n\nRead papers\nMake a poster\nWrite a paper\nWriting in the Sciences on Coursera"
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"section": "2.6 Code",
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"text": "2.6 Code\n\nWrite, work with, and manage source code and data\nPrepare for and carry out code review\nShare data\nWrite an R package\nDBMI software engineering team tips & tricks blog posts"
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"section": "2.7 Plan your semester/year",
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"text": "2.7 Plan your semester/year\nTemplates on yearly/semester planning and professional development are available here."
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"section": "2.8 Others",
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"text": "2.8 Others\n\nCareer development week\nRemote work | CU remote work policy | CU DBMI remote work agreement"
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"title": "5 Offboarding",
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"text": "5.1 Stay in touch\nWebpage | PI | Twitter | Mastodon | Email"
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"section": "5.2 Stay in touch",
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"text": "5.2 Stay in touch\nWebpage | PI | Twitter | Mastodon | Email"
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"section": "5.1 Ready to head out?",
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"text": "5.1 Ready to head out?\nPlease make sure you have checked these boxes before leaving our group.\n\nAll your code is on GitHub\nAll your processed data files/figures/reports (<100mb) are on GitHub\nLarge data files (raw/processed) are on the server (and backed up)\nAll your scripts and data files are well-annotated with appropriate README files\nAdded detailed status report of where things – what was tried, what worked/didn’t work, where the scripts/data files are, what remains to be done (within the scope of the project, and clear next steps)\nYou have reoriented me and at least 1-2 other project members with the precise status (and next steps) of the project and location of files\nYou are not a full member of the GitHub organization or Slack anymore but will retain access to the project channel/repo until publication.\nIf you have worked with us for ≥3mo, you will remain a part of #the-continuum channel on our Slack.\n\nGood luck!"
Copy file name to clipboardExpand all lines: index.qmd
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✍️ If you'd like to edit/update/contribute to this e-book (*built with [Quarto](https://quarto.org/docs/books)*), please [email me](mailto:janani.ravi@cuanschutz.edu) or submit a pull request to the [GitHub repository](https://github.com/JRaviLab/lab_docs) directly.
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