DESCRIPTION

Package: dreams
Title: Deep Read-level Error Model for Sequencing data
Version: 0.0.0.9000
Authors@R: 
    c(
    person(
      given = c("Mikkel", "Hovden"),
      family = "Christensen",
      email = "mikkel@hovden.dk",
      role = c("aut", "cre"),
      comment = c(ORCID = "0000-0002-2588-3036")),
    person(
      given = c("Simon", "Opstrup"),
      family = "Drue",
      email = "simon.drue@clin.au.dk",
      role = c("aut"),
      comment = c(ORCID = "0000-0002-1401-6527")
    )
  )
Description: DREAMS is an analysis pipeline that applies a neural network to low-frequency variant calling and circulating tumor DNA detection from next-generation DNA sequencing data.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews:
Imports: 
    dplyr,
    GenomicRanges,
    IRanges,
    purrr,
    readr,
    rlang,
    Rsamtools,
    stringr,
    tibble,
    tidyr,
    tfdatasets,
    R6,
    keras,
    parallel,
    doParallel,
    foreach,
    turboEM,
    reticulate
Suggests: 
    knitr,
    covr,
    testthat (>= 3.0.0),
    rmarkdown,
    learnr
Config/testthat/edition: 3
URL: https://github.com/JakobSkouPedersenLab/dreams
BugReports: https://github.com/JakobSkouPedersenLab/dreams/issues
VignetteBuilder: knitr