NAMESPACE

# Generated by roxygen2: do not edit by hand

export(call_cancer)
export(call_cancer_indels)
export(call_mutations)
export(dreams_cc)
export(dreams_cc_indels)
export(dreams_vc)
export(dreams_vc_indels)
export(dreams_vc_parallel)
export(get_training_data)
export(get_training_data_indels)
export(train_dreams_model)
export(train_dreams_model_indels)
import(doParallel)
import(dplyr)
import(foreach)
import(parallel)
import(stringr)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(IRanges,IRanges)
importFrom(R6,R6Class)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,FaFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,getSeq)
importFrom(Rsamtools,pileup)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(foreach,"%dopar%")
importFrom(keras,KerasCallback)
importFrom(keras,fit)
importFrom(keras,layer_batch_normalization)
importFrom(keras,layer_concatenate)
importFrom(keras,layer_dense)
importFrom(keras,layer_dense_features)
importFrom(keras,save_model_hdf5)
importFrom(keras,to_categorical)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map2_int)
importFrom(purrr,map_dbl)
importFrom(purrr,pmap)
importFrom(purrr,pmap_dbl)
importFrom(purrr,pmap_lgl)
importFrom(readr,read_csv)
importFrom(readr,write_csv)
importFrom(rlang,.data)
importFrom(stats,predict)
importFrom(stats,qchisq)
importFrom(stats,uniroot)
importFrom(stringr,str_count)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_locate_all)
importFrom(stringr,str_remove_all)
importFrom(stringr,str_which)
importFrom(tfdatasets,feature_spec)
importFrom(tfdatasets,step_categorical_column_with_vocabulary_list)
importFrom(tfdatasets,step_embedding_column)
importFrom(tfdatasets,step_indicator_column)
importFrom(tfdatasets,step_numeric_column)
importFrom(tibble,as_tibble)
importFrom(tidyr,unnest)