SegWorm is Matlab code from Dr. Eviatar Yemini built as part of the WormBehavior database
This version of the code is an attempt to rewrite/clean up the code by using classes and packages to better encapsulate functionality.
As of Sep 2014, the idea is for this repo to be completely ported over to movement_validation, in Python, soon.
- video to normalized worm: unfinished, current work at
seg_worm.parseWormFromVideo - normalized worm to features: finished, see example of usage in
seg_worm.testing.features.t_001__mrcCodeVsNewCode - features to stats: finished - see example usage in
seg_worm.testing.stats.t001_oldVsNewStats
Files for features, somewhere in the Google Drive folder example_data. @JimHokanson & @MichaelCurrie need to clean up this folder ... (i.e. issue 80 of the movement_validation repo)
Files for stats are all on the MRC ftp, see @slarson's discussion of the how to connect to the FTP
- Get the files and change any constants (these should be obvious in the files)
- Add the repository folder to the Matlab path
- If comparing to old code, add the folders oldFeatures and oldStats to the path