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1.5.0-DEV-13d1bd4689.log
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1.5.0-DEV-13d1bd4689.log
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Julia Version 1.5.0-DEV.0
Commit 13d1bd4689 (2019-12-31 18:18 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed Reexport ──────────────────── v0.2.0
Installed DataAPI ───────────────────── v1.1.0
Installed WeakRefStrings ────────────── v0.6.2
Installed Compat ────────────────────── v3.2.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed DataStructures ────────────── v0.17.6
Installed InvertedIndices ───────────── v1.0.0
Installed Tables ────────────────────── v0.2.11
Installed Parsers ───────────────────── v0.3.10
Installed DataValueInterfaces ───────── v1.0.0
Installed TableTraits ───────────────── v1.0.0
Installed CSV ───────────────────────── v0.5.21
Installed JSON ──────────────────────── v0.21.0
Installed DataFrames ────────────────── v0.20.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed FilePathsBase ─────────────── v0.7.0
Installed Missings ──────────────────── v0.4.3
Installed PooledArrays ──────────────── v0.5.3
Installed CategoricalArrays ─────────── v0.7.5
Updating `~/.julia/environments/v1.5/Project.toml`
[336ed68f] + CSV v0.5.21
Updating `~/.julia/environments/v1.5/Manifest.toml`
[336ed68f] + CSV v0.5.21
[324d7699] + CategoricalArrays v0.7.5
[34da2185] + Compat v3.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[48062228] + FilePathsBase v0.7.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.3
[189a3867] + Reexport v0.2.0
[a2af1166] + SortingAlgorithms v0.3.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing CSV
Installed CodecZlib ────────── v0.6.0
Installed TranscodingStreams ─ v0.9.5
Installed BinaryProvider ───── v0.5.8
Updating `/tmp/jl_sJdyEo/Project.toml`
[944b1d66] + CodecZlib v0.6.0
Updating `/tmp/jl_sJdyEo/Manifest.toml`
[b99e7846] + BinaryProvider v0.5.8
[944b1d66] + CodecZlib v0.6.0
[3bb67fe8] + TranscodingStreams v0.9.5
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_CAuc8I/Project.toml`
[no changes]
Updating `/tmp/jl_CAuc8I/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_sJdyEo/Project.toml`
[336ed68f] CSV v0.5.21
[324d7699] CategoricalArrays v0.7.5
[944b1d66] CodecZlib v0.6.0
[a93c6f00] DataFrames v0.20.0
[48062228] FilePathsBase v0.7.0
[69de0a69] Parsers v0.3.10
[2dfb63ee] PooledArrays v0.5.3
[bd369af6] Tables v0.2.11
[ea10d353] WeakRefStrings v0.6.2
[ade2ca70] Dates
[a63ad114] Mmap
[9a3f8284] Random
[8dfed614] Test
[4ec0a83e] Unicode
thread = 1 warning: only found 7 / 8 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: error parsing Int64 on row = 1, col = 1: "abc
", error=INVALID: SENTINEL | NEWLINE | EOF | INVALID_DELIMITER
testing test_utf8_with_BOM.csv
testing test_utf8.csv
testing test_windows.csv
testing test_single_column.csv
testing test_empty_file.csv
testing test_empty_file_newlines.csv
testing test_simple_quoted.csv
testing test_quoted_delim_and_newline.csv
testing test_quoted_numbers.csv
testing test_crlf_line_endings.csv
testing test_newline_line_endings.csv
testing test_mac_line_endings.csv
testing test_no_header.csv
testing test_2_footer_rows.csv
testing test_footer_missing.csv
testing test_footer_missing.csv
testing test_dates.csv
testing test_excel_date_formats.csv
testing test_datetimes.csv
testing test_missing_value_NULL.csv
testing test_missing_value_NULL.csv
testing test_missing_value.csv
testing test_header_range.csv
testing test_header_int_list.csv
testing test_basic.csv
testing test_basic_pipe.csv
testing test_tab_null_empty.txt
testing test_tab_null_string.txt
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=5, maxsize=Inf, ptr=1, mark=-1)
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=0, maxsize=Inf, ptr=1, mark=-1)
testing dash_as_null.csv
testing plus_as_null.csv
testing comma_decimal.csv
testing double_quote_quotechar_and_escapechar.csv
testing census.txt
testing bools.csv
testing attenu.csv
testing test_null_only_column.csv
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=20, maxsize=Inf, ptr=1, mark=-1)
testing categorical.csv
testing categorical.csv
testing categorical.csv
testing categorical.csv
testing baseball.csv
testing FL_insurance_sample.csv
testing FL_insurance_sample.csv
testing SacramentocrimeJanuary2006.csv
testing Sacramentorealestatetransactions.csv
testing SalesJan2009.csv
testing stocks.csv
testing TechCrunchcontinentalUSA.csv
testing Fielding.csv
testing latest (1).csv
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=16, maxsize=Inf, ptr=1, mark=-1)
testing issue_198.csv
testing issue_198_part2.csv
thread = 1 warning: parsed expected 3 columns, but didn't reach end of line on data row: 2. Ignoring any extra columns on this row
thread = 1 warning: parsed expected 3 columns, but didn't reach end of line on data row: 3. Ignoring any extra columns on this row
thread = 1 warning: parsed expected 3 columns, but didn't reach end of line on data row: 2. Ignoring any extra columns on this row
thread = 1 warning: parsed expected 3 columns, but didn't reach end of line on data row: 3. Ignoring any extra columns on this row
testing issue_207.csv
thread = 1 warning: only found 5 / 6 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 5 / 6 columns on data row: 2. Filling remaining columns with `missing`
testing issue_120.csv
testing pandas_zeros.csv
testing transposed.csv
testing transposed_1row.csv
testing transposed_emtpy.csv
testing transposed_extra_newline.csv
testing transposed_noheader.csv
testing transposed_noheader.csv
testing test_utf8.csv
testing test_utf8.csv
testing test_multiple_missing.csv
testing test_openclosequotes.csv
testing test_truestrings.csv
testing test_truestrings.csv
testing test_string_delimiters.csv
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=20, maxsize=Inf, ptr=1, mark=-1)
testing test_basic.csv
testing test_basic.csv
testing test_truestrings.csv
testing test_repeated_delimiters.csv
testing test_comments1.csv
testing test_comments_multiple.csv
testing test_comments_multichar.csv
testing test_not_enough_columns.csv
thread = 1 warning: only found 3 / 5 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 3 / 5 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 3 / 5 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 3 / 5 columns on data row: 2. Filling remaining columns with `missing`
testing test_not_enough_columns2.csv
thread = 1 warning: only found 3 / 5 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 3 / 5 columns on data row: 2. Filling remaining columns with `missing`
testing test_correct_trailing_missings.csv
thread = 1 warning: only found 4 / 5 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 4 / 5 columns on data row: 2. Filling remaining columns with `missing`
testing norwegian_data.csv
testing test_duplicate_columnnames.csv
testing test_bad_datetime.csv
testing test_types.csv
thread = 1 warning: only found 7 / 8 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 7 / 8 columns on data row: 1. Filling remaining columns with `missing`
testing test_issue_326.wsv
testing test_missing_last_field.csv
thread = 1 warning: only found 2 / 3 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 2 / 3 columns on data row: 2. Filling remaining columns with `missing`
testing test_delim.tsv
testing test_delim.wsv
testing test_comment_first_row.csv
testing test_comment_first_row.csv
testing test_repeated_delim_371.csv
testing test_file_issue_154.csv
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=16, maxsize=Inf, ptr=1, mark=-1)
thread = 1 warning: only found 2 / 3 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 2 / 3 columns on data row: 2. Filling remaining columns with `missing`
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=19, maxsize=Inf, ptr=1, mark=-1)
thread = 1 warning: only found 1 / 3 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 1 / 3 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 1 / 3 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 1 / 3 columns on data row: 2. Filling remaining columns with `missing`
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=19, maxsize=Inf, ptr=1, mark=-1)
thread = 1 warning: only found 1 / 3 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 1 / 3 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 1 / 3 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 1 / 3 columns on data row: 2. Filling remaining columns with `missing`
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=43, maxsize=Inf, ptr=1, mark=-1)
thread = 1 warning: parsed expected 5 columns, but didn't reach end of line on data row: 1. Ignoring any extra columns on this row
thread = 1 warning: parsed expected 5 columns, but didn't reach end of line on data row: 2. Ignoring any extra columns on this row
thread = 1 warning: parsed expected 5 columns, but didn't reach end of line on data row: 3. Ignoring any extra columns on this row
thread = 1 warning: parsed expected 5 columns, but didn't reach end of line on data row: 1. Ignoring any extra columns on this row
thread = 1 warning: parsed expected 5 columns, but didn't reach end of line on data row: 2. Ignoring any extra columns on this row
thread = 1 warning: parsed expected 5 columns, but didn't reach end of line on data row: 3. Ignoring any extra columns on this row
testing IOBuffer(data=UInt8[...], readable=true, writable=false, seekable=true, append=false, size=17, maxsize=Inf, ptr=1, mark=-1)
testing heat_flux.dat
testing log001_vehicle_status_flags_0.txt
testing fecal_samples.csv
header is: 1, datarow computed as: 2
headerpos = 4, datapos = 481
estimated rows: 756
detected delimiter: ","
column names detected: [:SampleID, :Mother_Child, :SubjectID, :MaternalID, :TimePoint, :Fecal_EtOH, :CollectionRep, :DOC, :RAInitials_DOC, :DOF, :RAInitials_DOF, :Date_Brought_In, :RAInitials_Brought, :Date_Shipped, :RAInitials_Shipped, :Date_Aliquoted, :Number_Replicates, :RAInitials_Aliquot, :StorageBox, :DOE, :Extract_number, :AliquotRep, :DNABox, :KitUsed, :RAInitials_Extract, :DNAConc, :DOM, :Mgx_processed, :Mgx_batch, :DO16S, :_16S_processed, :_16S_batch, :_16S_plate, :Notes, :Discrepancies, :Batch_1_Mapping, :Mgx_batch_Mapping, :_16S_batch_Mapping, :Mother_Child_Dyads]
byte position of data computed at: 481
thread = 1 warning: only found 38 / 39 columns on data row: 1079. Filling remaining columns with `missing`
header is: 1, datarow computed as: 2
headerpos = 4, datapos = 481
estimated rows: 756
detected delimiter: ","
column names detected: [:SampleID, :Mother_Child, :SubjectID, :MaternalID, :TimePoint, :Fecal_EtOH, :CollectionRep, :DOC, :RAInitials_DOC, :DOF, :RAInitials_DOF, :Date_Brought_In, :RAInitials_Brought, :Date_Shipped, :RAInitials_Shipped, :Date_Aliquoted, :Number_Replicates, :RAInitials_Aliquot, :StorageBox, :DOE, :Extract_number, :AliquotRep, :DNABox, :KitUsed, :RAInitials_Extract, :DNAConc, :DOM, :Mgx_processed, :Mgx_batch, :DO16S, :_16S_processed, :_16S_batch, :_16S_plate, :Notes, :Discrepancies, :Batch_1_Mapping, :Mgx_batch_Mapping, :_16S_batch_Mapping, :Mother_Child_Dyads]
byte position of data computed at: 481
computed typecodes are: Int8[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
thread = 1 warning: didn't pre-allocate enough tape while parsing on row 756, re-allocating from 756 to 1023...
thread = 1 warning: didn't pre-allocate enough tape while parsing on row 1023, re-allocating from 1023 to 1083...
thread = 1 warning: only found 38 / 39 columns on data row: 1079. Filling remaining columns with `missing`
time for initial parsing to tape: 0.06612300872802734
types after parsing: Type[String, PooledString, Int64, String, Int64, PooledString, Int64, Date, Union{Missing, PooledString}, Union{Missing, Date}, Union{Missing, PooledString}, Union{Missing, Date}, Union{Missing, PooledString}, Union{Missing, Date}, Union{Missing, PooledString}, Union{Missing, Date}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, Date}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, Float64}, Union{Missing, Date}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, Date}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, String}, Union{Missing, PooledString}, Union{Missing, PooledString}, Union{Missing, Int64}], pool = 0.1
testing time.csv
testing escaped_pooled.csv
testing error_comment.txt
testing test_508.csv
testing bug555.txt
testing test_basic.csv
thread = 1 warning: only found 3 / 5 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 3 / 5 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: only found 4 / 5 columns on data row: 2. Filling remaining columns with `missing`
CSV.Rows("<Base.GenericIOBuffer{Array{UInt8,1}}>"):
Size: 1
Tables.Schema:
:X Union{Missing, String}thread = 1 warning: only found 1 / 3 columns on data row: 1. Filling remaining columns with `missing`
thread = 1 warning: only found 2 / 3 columns on data row: 2. Filling remaining columns with `missing`
thread = 1 warning: parsed expected 3 columns, but didn't reach end of line on data row: 2. Ignoring any extra columns on this row
Test Summary: | Pass Total
CSV | 1204 1204
Testing CSV tests passed