-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.5.0-DEV-13d1bd4689.log
873 lines (842 loc) · 77.5 KB
/
1.5.0-DEV-13d1bd4689.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
Julia Version 1.5.0-DEV.0
Commit 13d1bd4689 (2019-12-31 18:18 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed IniFile ──────────── v0.5.0
Installed Cascadia ─────────── v0.4.0
Installed MbedTLS ──────────── v0.7.0
Installed Gumbo ────────────── v0.5.1
Installed BinaryProvider ───── v0.5.8
Installed HTTP ─────────────── v0.8.8
Installed JSON ─────────────── v0.21.0
Installed DataDepsGenerators ─ v0.5.0
Installed Parsers ──────────── v0.3.10
Installed AbstractTrees ────── v0.2.1
Updating `~/.julia/environments/v1.5/Project.toml`
[a14fa8ac] + DataDepsGenerators v0.5.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[1520ce14] + AbstractTrees v0.2.1
[b99e7846] + BinaryProvider v0.5.8
[54eefc05] + Cascadia v0.4.0
[a14fa8ac] + DataDepsGenerators v0.5.0
[708ec375] + Gumbo v0.5.1
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[682c06a0] + JSON v0.21.0
[739be429] + MbedTLS v0.7.0
[69de0a69] + Parsers v0.3.10
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[8f399da3] + Libdl
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[de0858da] + Printf
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[8dfed614] + Test
[4ec0a83e] + Unicode
Building MbedTLS → `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Updating `/tmp/jl_I6J13y/Project.toml`
[no changes]
Updating `/tmp/jl_I6J13y/Manifest.toml`
[no changes]
Building Gumbo ──→ `~/.julia/packages/Gumbo/G7Qbw/deps/build.log`
Updating `/tmp/jl_3tH5Ri/Project.toml`
[no changes]
Updating `/tmp/jl_3tH5Ri/Manifest.toml`
[no changes]
Testing DataDepsGenerators
Installed MD5 ─────────────────────── v0.2.1
Installed AxisAlgorithms ──────────── v1.0.0
Installed CoordinateTransformations ─ v0.5.0
Installed DataAPI ─────────────────── v1.1.0
Installed DataStructures ──────────── v0.17.6
Installed Reexport ────────────────── v0.2.0
Installed DataDeps ────────────────── v0.7.1
Installed ReferenceTests ──────────── v0.8.3
Installed Compat ──────────────────── v2.2.0
Installed OrderedCollections ──────── v1.1.0
Installed NaNMath ─────────────────── v0.3.3
Installed PaddedViews ─────────────── v0.4.2
Installed Ratios ──────────────────── v0.3.1
Installed ColorVectorSpace ────────── v0.8.2
Installed FixedPointNumbers ───────── v0.7.0
Installed ImageCore ───────────────── v0.8.10
Installed Rotations ───────────────── v0.13.0
Installed Crayons ─────────────────── v4.0.1
Installed DeepDiffs ───────────────── v1.1.0
Installed Requires ────────────────── v1.0.0
Installed OffsetArrays ────────────── v0.11.4
Installed IdentityRanges ──────────── v0.3.0
Installed WoodburyMatrices ────────── v0.4.1
Installed ImageTransformations ────── v0.8.1
Installed SortingAlgorithms ───────── v0.3.1
Installed ImageInTerminal ─────────── v0.4.2
Installed Distances ───────────────── v0.8.2
Installed FileIO ──────────────────── v1.2.1
Installed SpecialFunctions ────────── v0.9.0
Installed ColorTypes ──────────────── v0.9.0
Installed MappedArrays ────────────── v0.2.2
Installed Interpolations ──────────── v0.12.5
Installed Missings ────────────────── v0.4.3
Installed StaticArrays ────────────── v0.12.1
Installed Graphics ────────────────── v1.0.1
Installed StatsBase ───────────────── v0.32.0
Installed OpenSpecFun_jll ─────────── v0.5.3+1
Installed Colors ──────────────────── v0.11.1
Updating `/tmp/jl_emkl5q/Project.toml`
[124859b0] + DataDeps v0.7.1
[6ac74813] + MD5 v0.2.1
[324d217c] + ReferenceTests v0.8.3
Updating `/tmp/jl_emkl5q/Manifest.toml`
[13072b0f] + AxisAlgorithms v1.0.0
[3da002f7] + ColorTypes v0.9.0
[c3611d14] + ColorVectorSpace v0.8.2
[5ae59095] + Colors v0.11.1
[34da2185] + Compat v2.2.0
[150eb455] + CoordinateTransformations v0.5.0
[a8cc5b0e] + Crayons v4.0.1
[9a962f9c] + DataAPI v1.1.0
[124859b0] + DataDeps v0.7.1
[864edb3b] + DataStructures v0.17.6
[ab62b9b5] + DeepDiffs v1.1.0
[b4f34e82] + Distances v0.8.2
[5789e2e9] + FileIO v1.2.1
[53c48c17] + FixedPointNumbers v0.7.0
[a2bd30eb] + Graphics v1.0.1
[bbac6d45] + IdentityRanges v0.3.0
[a09fc81d] + ImageCore v0.8.10
[d8c32880] + ImageInTerminal v0.4.2
[02fcd773] + ImageTransformations v0.8.1
[a98d9a8b] + Interpolations v0.12.5
[6ac74813] + MD5 v0.2.1
[dbb5928d] + MappedArrays v0.2.2
[e1d29d7a] + Missings v0.4.3
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[5432bcbf] + PaddedViews v0.4.2
[c84ed2f1] + Ratios v0.3.1
[189a3867] + Reexport v0.2.0
[324d217c] + ReferenceTests v0.8.3
[ae029012] + Requires v1.0.0
[6038ab10] + Rotations v0.13.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[efce3f68] + WoodburyMatrices v0.4.1
[8bb1440f] + DelimitedFiles
[76f85450] + LibGit2
[37e2e46d] + LinearAlgebra
[44cfe95a] + Pkg
[3fa0cd96] + REPL
[1a1011a3] + SharedArrays
[2f01184e] + SparseArrays
[10745b16] + Statistics
[cf7118a7] + UUIDs
Running sandbox
Status `/tmp/jl_emkl5q/Project.toml`
[1520ce14] AbstractTrees v0.2.1
[54eefc05] Cascadia v0.4.0
[124859b0] DataDeps v0.7.1
[a14fa8ac] DataDepsGenerators v0.5.0
[708ec375] Gumbo v0.5.1
[cd3eb016] HTTP v0.8.8
[682c06a0] JSON v0.21.0
[6ac74813] MD5 v0.2.1
[324d217c] ReferenceTests v0.8.3
[ade2ca70] Dates
[b77e0a4c] InteractiveUtils
[8dfed614] Test
citation_generation: Test Failed at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/citation_generation.jl:9
Expression: remove_cite_version(citation_text("https://doi.org/10.5061/dryad.8790")) == "Smith, S. A., Beaulieu, J. M., Stamatakis, A., & Donoghue, M. J. (2011). Data from: Understanding angiosperm diversification using small and large phylogenetic trees [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.8790"
Evaluated: "Smith, S. A., Beaulieu, J. M., Stamatakis, A., Donoghue, M. J., Beaulieu, J. M., Donoghue, M. J., … Stamatakis, A. (2011). <i>Data from: Understanding angiosperm diversification using small and large phylogenetic trees</i> [Data set]. Dryad. https://doi.org/10.5061/DRYAD.8790" == "Smith, S. A., Beaulieu, J. M., Stamatakis, A., & Donoghue, M. J. (2011). Data from: Understanding angiosperm diversification using small and large phylogenetic trees [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.8790"
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/citation_generation.jl:9
[2] include(::String) at ./client.jl:439
[3] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[4] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[5] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[6] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[7] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
Integration Test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/UCI.jl:11
Test threw exception
Expression: length(collect(readdir(datadep"Air Quality Data Set (UCI ML Repository)"))) > 0
DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.")
Stacktrace:
[1] ensure_download_permitted at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:26 [inlined]
[2] download(::DataDep{Nothing,Array{String,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String; remotepath::Array{String,1}, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:70
[3] download at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:70 [inlined]
[4] handle_missing at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:10 [inlined]
[5] _resolve(::DataDep{Nothing,Array{String,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:83
[6] resolve(::DataDep{Nothing,Array{String,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:29
[7] resolve(::String, ::String, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:54
[8] resolve at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:73 [inlined]
[9] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/UCI.jl:11 [inlined]
[10] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[11] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/UCI.jl:10 [inlined]
[12] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[13] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/UCI.jl:7
Integration Test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:20
Test threw exception
Expression: length(collect(readdir(datadep"March Madness Predictions"))) > 0
DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.")
Stacktrace:
[1] ensure_download_permitted at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:26 [inlined]
[2] download(::DataDep{Nothing,Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String; remotepath::Array{Any,1}, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:70
[3] download at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:70 [inlined]
[4] handle_missing at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:10 [inlined]
[5] _resolve(::DataDep{Nothing,Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:83
[6] resolve(::DataDep{Nothing,Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:29
[7] resolve(::String, ::String, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:54
[8] resolve at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:73 [inlined]
[9] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:20 [inlined]
[10] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[11] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:19 [inlined]
[12] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:16 [inlined]
[14] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:15
Integration Test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:41
Test threw exception
Expression: length(collect(readdir(datadep"Presidential Campaign Contributions"))) > 0
DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.")
Stacktrace:
[1] ensure_download_permitted at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:26 [inlined]
[2] download(::DataDep{Nothing,Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String; remotepath::Array{Any,1}, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:70
[3] download at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:70 [inlined]
[4] handle_missing at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:10 [inlined]
[5] _resolve(::DataDep{Nothing,Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:83
[6] resolve(::DataDep{Nothing,Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:29
[7] resolve(::String, ::String, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:54
[8] resolve at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:73 [inlined]
[9] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:41 [inlined]
[10] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[11] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:40 [inlined]
[12] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:37 [inlined]
[14] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/GitHub.jl:36
DataDryad test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataDryad.jl:6
Got exception outside of a @test
BoundsError: attempt to access 0-element Array{Gumbo.HTMLNode,1} at index [1]
Stacktrace:
[1] getindex at ./array.jl:787 [inlined]
[2] first at ./abstractarray.jl:323 [inlined]
[3] data_fullname(::DataDryad, ::Gumbo.HTMLDocument) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/APIs/DataDryad.jl:63
[4] find_metadata(::DataDryad, ::String, ::Nothing) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:73
[5] #generate#7 at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined]
[6] generate at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined] (repeats 2 times)
[7] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataDryad.jl:7 [inlined]
[8] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[9] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataDryad.jl:7
[10] include(::String) at ./client.jl:439
[11] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[12] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[14] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[16] include(::String) at ./client.jl:439
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:264
[20] _start() at ./client.jl:484
DataOneV1 test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataOneV1.jl:6
Got exception outside of a @test
HTTP.ExceptionRequest.StatusError(404, "GET", "/mn/object/http://dx.doi.org/10.5061/dryad.74699", HTTP.Messages.Response:
"""
HTTP/1.1 404 Not Found
Date: Thu, 02 Jan 2020 15:16:34 GMT
Content-Type: text/html; charset=utf-8
Content-Length: 1621
Connection: keep-alive
Set-Cookie: AWSALB=oIDZU5vAgSSGlD1Bm9XjrdP2YKz4LK4zdn3P9CXLY5pfDJQstNZjl0dpIFwJXV1/owVk6u7vxAaLcT6/UFw9g6CmoK0OtGyYhALknrjdGlrZnVi/IQOdZY4AMuUL; Expires=Thu, 09 Jan 2020 15:16:34 GMT; Path=/
Server: nginx/1.17.3 + Phusion Passenger 6.0.4
Status: 404 Not Found
X-Request-Id: 087f4892-e532-458c-a2ac-b7df338831a7
X-Runtime: 0.002652
X-Powered-By: Phusion Passenger 6.0.4
<!DOCTYPE html>
<html>
<head>
<title>The page you were looking for doesn't exist (404)</title>
<meta http-equiv="refresh" content="0;url=/stash/404">
<meta name="viewport" content="width=device-width,initial-scale=1">
<style>
body {
background-color: #EFEFEF;
color: #2E2F30;
text-align: center;
font-family: arial, sans-serif;
margin: 0;
}
div.dialog {
width: 95%;
max-width: 33em;
margin: 4em auto 0;
}
div.dialog > div {
border: 1px solid #CCC;
border-right-color: #999;
border-left-color: #999;
border-bottom-color: #BBB;
border-top: #B00100 solid 4px;
border-top-left-radius: 9px;
border-top-right-radius: 9px;
background-color: white;
padding: 7px 12% 0;
box-shadow: 0 3px 8px rgba(50, 50, 50, 0.17);
}
h1 {
font-size: 100%;
color: #730E15;
line-height: 1.5em;
}
div.dialog > p {
margin: 0 0 1em;
padding: 1em;
background-color: #F7F7F7;
border: 1px solid #CCC;
⋮
1621-byte body
""")
Stacktrace:
[1] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any,N} where N; kw::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/ExceptionRequest.jl:22
[2] (::Base.var"#58#60"{Base.var"#58#59#61"{ExponentialBackOff,HTTP.RetryRequest.var"#2#3"{Bool,HTTP.Messages.Request},typeof(HTTP.request)}})(::Type{T} where T, ::Vararg{Any,N} where N; kwargs::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at ./error.jl:288
[3] #request#1 at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RetryRequest.jl:44 [inlined]
[4] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/MessageRequest.jl:51
[5] request at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/MessageRequest.jl:28 [inlined]
[6] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RedirectRequest.jl:24
[7] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RedirectRequest.jl:21
[8] request(::String, ::String, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; headers::Array{Pair{SubString{String},SubString{String}},1}, body::Array{UInt8,1}, query::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/HTTP.jl:308
[9] request at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/HTTP.jl:308 [inlined] (repeats 2 times)
[10] getpage_raw at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/utils.jl:34 [inlined]
[11] #64 at ./operators.jl:859 [inlined]
[12] mainpage_url at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:123 [inlined]
[13] find_metadata(::DataOneV1, ::String, ::Nothing) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:72
[14] #generate#7 at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined]
[15] generate at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined] (repeats 2 times)
[16] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataOneV1.jl:7 [inlined]
[17] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[18] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataOneV1.jl:7
[19] include(::String) at ./client.jl:439
[20] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[21] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[22] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[23] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[24] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[25] include(::String) at ./client.jl:439
[26] top-level scope at none:6
[27] eval(::Module, ::Any) at ./boot.jl:331
[28] exec_options(::Base.JLOptions) at ./client.jl:264
[29] _start() at ./client.jl:484
TERN test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataOneV2/TERN.jl:6
Got exception outside of a @test
IOError(MbedTLS error code -9984: X509 - Certificate verification failed, e.g. CRL, CA or signature check failed during request(https://dataone.tern.org.au/mn/v2/object/aekos.org.au/collection/nsw.gov.au/nsw_atlas/vis_flora_module/KAHDRAIN.20150515))
Stacktrace:
[1] handshake(::MbedTLS.SSLContext) at /home/pkgeval/.julia/packages/MbedTLS/a1JFn/src/ssl.jl:83
[2] handshake! at /home/pkgeval/.julia/packages/MbedTLS/a1JFn/src/MbedTLS.jl:141 [inlined]
[3] sslconnection(::Sockets.TCPSocket, ::SubString{String}; require_ssl_verification::Bool, sslconfig::MbedTLS.SSLConfig, kw::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/ConnectionPool.jl:637
[4] #getconnection#17 at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/ConnectionPool.jl:621 [inlined]
[5] getconnection(::Type{HTTP.ConnectionPool.Transaction{MbedTLS.SSLContext}}, ::SubString{String}, ::SubString{String}; connection_limit::Int64, pipeline_limit::Int64, idle_timeout::Int64, reuse_limit::Int64, require_ssl_verification::Bool, kw::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/ConnectionPool.jl:517
[6] request(::Type{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}, ::HTTP.URIs.URI, ::HTTP.Messages.Request, ::Array{UInt8,1}; proxy::Nothing, socket_type::Type{T} where T, reuse_limit::Int64, kw::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/ConnectionRequest.jl:41
[7] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any,N} where N; kw::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/ExceptionRequest.jl:19
[8] (::Base.var"#58#60"{Base.var"#58#59#61"{ExponentialBackOff,HTTP.RetryRequest.var"#2#3"{Bool,HTTP.Messages.Request},typeof(HTTP.request)}})(::Type{T} where T, ::Vararg{Any,N} where N; kwargs::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at ./error.jl:301
[9] #request#1 at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RetryRequest.jl:44 [inlined]
[10] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/MessageRequest.jl:51
[11] request at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/MessageRequest.jl:28 [inlined]
[12] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RedirectRequest.jl:24
[13] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RedirectRequest.jl:21
[14] request(::String, ::String, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; headers::Array{Pair{SubString{String},SubString{String}},1}, body::Array{UInt8,1}, query::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/HTTP.jl:308
[15] request at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/HTTP.jl:308 [inlined] (repeats 2 times)
[16] getpage_raw at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/utils.jl:34 [inlined]
[17] #64 at ./operators.jl:859 [inlined]
[18] mainpage_url at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:123 [inlined]
[19] find_metadata(::TERN, ::String, ::Nothing) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:72
[20] #generate#7 at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined]
[21] generate at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined] (repeats 2 times)
[22] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataOneV2/TERN.jl:7 [inlined]
[23] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[24] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataOneV2/TERN.jl:7
[25] include(::String) at ./client.jl:439
[26] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[27] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[28] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[29] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[30] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[31] include(::String) at ./client.jl:439
[32] top-level scope at none:6
[33] eval(::Module, ::Any) at ./boot.jl:331
[34] exec_options(::Base.JLOptions) at ./client.jl:264
[35] _start() at ./client.jl:484
CKAN Demo test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/CKAN.jl:6
Got exception outside of a @test
HTTP.ExceptionRequest.StatusError(404, "GET", "/api/3/action/package_show?id=gold-prices", HTTP.Messages.Response:
"""
HTTP/1.1 404 Not Found
Date: Thu, 02 Jan 2020 15:16:49 GMT
Content-Type: application/json;charset=utf-8
Content-Length: 156
Connection: keep-alive
Set-Cookie: __cfduid=d5fa54f77adc3f8764f399ec139ec5d531577978208; expires=Sat, 01-Feb-20 15:16:48 GMT; path=/; domain=.ckan.org; HttpOnly; SameSite=Lax; Secure
CF-Cache-Status: DYNAMIC
Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
Server: cloudflare
CF-RAY: 54edb23de9d0e851-EWR
{"help": "https://demo.ckan.org/api/3/action/help_show?name=package_show", "success": false, "error": {"message": "Not found", "__type": "Not Found Error"}}""")
Stacktrace:
[1] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any,N} where N; kw::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/ExceptionRequest.jl:22
[2] (::Base.var"#58#60"{Base.var"#58#59#61"{ExponentialBackOff,HTTP.RetryRequest.var"#2#3"{Bool,HTTP.Messages.Request},typeof(HTTP.request)}})(::Type{T} where T, ::Vararg{Any,N} where N; kwargs::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at ./error.jl:288
[3] #request#1 at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RetryRequest.jl:44 [inlined]
[4] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/MessageRequest.jl:51
[5] request at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/MessageRequest.jl:28 [inlined]
[6] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RedirectRequest.jl:24
[7] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/RedirectRequest.jl:21
[8] request(::String, ::String, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; headers::Array{Pair{SubString{String},SubString{String}},1}, body::Array{UInt8,1}, query::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/HTTP.jl:308
[9] request at /home/pkgeval/.julia/packages/HTTP/lZVI1/src/HTTP.jl:308 [inlined] (repeats 2 times)
[10] getpage_raw at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/utils.jl:34 [inlined]
[11] #64 at ./operators.jl:859 [inlined]
[12] mainpage_url(::CKAN, ::String) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/APIs/CKAN.jl:34
[13] find_metadata(::CKAN, ::String, ::Nothing) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:72
[14] #generate#7 at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined]
[15] generate at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined] (repeats 2 times)
[16] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/CKAN.jl:7 [inlined]
[17] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[18] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/CKAN.jl:7
[19] include(::String) at ./client.jl:439
[20] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[21] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[22] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[23] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[24] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[25] include(::String) at ./client.jl:439
[26] top-level scope at none:6
[27] eval(::Module, ::Any) at ./boot.jl:331
[28] exec_options(::Base.JLOptions) at ./client.jl:264
[29] _start() at ./client.jl:484
Test for "CKAN Consumer Complaint.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Consumer Complaint Database\",
\"\"\"
\tDataset: Consumer Complaint Database
\tWebsite: https://catalog.data.gov/dataset/consumer-complaint-database
\tAuthor:
\tMaintainer: devops@cfpb.gov
\tDate of Creation: February 26, 2014
\tLicense: License not specified
\tThese are complaints we’ve received about financial products and services.
\t\"\"\",
- \tAny[\"https://data.consumerfinance.gov/api/views/s6ew-h6mp/rows.csv?accessType=DOWNLOAD\", \"https://data.consumerfinance.gov/api/views/s6ew-h6mp/rows.csv?accessType=DOWNLOAD\", \"http://data.consumerfinance.gov/api/views.json\", \"http://data.consumerfinance.gov/api/views.xml\", \"http://data.consumerfinance.gov/api/views/s6ew-h6mp.json\"],
+ \tAny[\"https://data.consumerfinance.gov/api/views/s6ew-h6mp/rows.csv?accessType=DOWNLOAD\", \"https://data.consumerfinance.gov/api/views.json\", \"https://data.consumerfinance.gov/api/views.xml\", \"https://data.consumerfinance.gov/api/views/s6ew-h6mp.json\"],
))"""
-------------------------------
data.gov test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/CKAN.jl:17
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:147
[3] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:100
[4] test_reference(::String, ::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90
[5] test_reference at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90 [inlined]
[6] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/CKAN.jl:18 [inlined]
[7] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[8] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/CKAN.jl:18
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[11] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[13] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
Test for "DataCite Ecology.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Data from Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation\",
\"\"\"
\tDataset: Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation
\tWebsite: https://doi.org/10.5061/dryad.74699
\tAuthor: Eric J. B. Von Wettberg et al.
\tDate of Publication: 2018
- \tLicense: https://creativecommons.org/publicdomain/zero/1.0/
+ \tLicense: https://creativecommons.org/publicdomain/zero/1.0
- \t
- \tPlease cite this paper: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L. B., Moenga, S. M., … Cook, D. R. (2018). Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation. Nature Communications, 9(1). doi:10.1038/s41467-018-02867-z
+ \tDomesticated species are impacted in unintended ways during domestication and breeding. Changes in the nature and intensity of selection impart genetic drift, reduce diversity, and increase the frequency of deleterious alleles. Such outcomes constrain our ability to expand the cultivation of crops into environments that differ from those under which domestication occurred. We address this need in chickpea, an important pulse legume, by harnessing the diversity of wild crop relatives. We document an extreme domestication-related genetic bottleneck and decipher the genetic history of wild populations. We provide evidence of ancestral adaptations for seed coat color crypsis, estimate the impact of environment on genetic structure and trait values, and demonstrate variation between wild and cultivated accessions for agronomic properties. A resource of genotyped, association mapping progeny functionally links the wild and cultivated gene pools and is an essential resource chickpea for improvement, while our methods inform collection of other wild crop progenitor species.
\t
- \tPlease cite this dataset: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L., Moenga, S. M., … Cook, D. R. (2018). Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.74699
+ \tPlease cite this dataset: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L., Moenga, S. M., … Cook, D. R. (2018). <i>Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation</i> [Data set]. Dryad. https://doi.org/10.5061/DRYAD.74699
\t\"\"\",
\tmissing,
))"""
-------------------------------
DataCite test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataCite.jl:6
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:147
[3] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:100
[4] test_reference(::String, ::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90
[5] test_reference at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90 [inlined]
[6] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataCite.jl:7 [inlined]
[7] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[8] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/DataCite.jl:7
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[11] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[13] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
[ Info: Generated registration block uses MD5 hashes, the MD5.jl package will be required.
Integration Test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:14
Test threw exception
Expression: length(collect(readdir(datadep"Youth Activism in Chile from urban educational inequalities to experiences of living together and solidarity"))) > 0
DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.")
Stacktrace:
[1] ensure_download_permitted at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:26 [inlined]
[2] download(::DataDep{Array{Tuple{typeof(md5),String},1},Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String; remotepath::Array{Any,1}, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:70
[3] download at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:70 [inlined]
[4] handle_missing at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution_automatic.jl:10 [inlined]
[5] _resolve(::DataDep{Array{Tuple{typeof(md5),String},1},Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:83
[6] resolve(::DataDep{Array{Tuple{typeof(md5),String},1},Array{Any,1},typeof(DataDeps.fetch_default),typeof(identity)}, ::String, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:29
[7] resolve(::String, ::String, ::String) at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:54
[8] resolve at /home/pkgeval/.julia/packages/DataDeps/ai3FE/src/resolution.jl:73 [inlined]
[9] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:14 [inlined]
[10] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[11] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:13 [inlined]
[12] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[13] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:10 [inlined]
[14] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[15] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:9
Test for "Figshare Chile Activism.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Youth Activism in Chile from urban educational inequalities to experiences of living together and solidarity\",
\"\"\"
\tDataset: Youth Activism in Chile: from urban educational inequalities to experiences of living together and solidarity
\tWebsite: https://figshare.com/articles/Youth_Activism_in_Chile_from_urban_educational_inequalities_to_experiences_of_living_together_and_solidarity/6504206
\tAuthor: Ivette Hernandez Santibañez
- \tDate of Publication: 2018-09-01T03:04:44Z
+ \tDate of Publication: 2018-06-13T03:04:55Z
\tLicense: CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/)
\tABSTRACT: This article examines the geographies of youth political activism in Chile. It makes the argument that a historical spatial identity of public education, as the engine of working-class and middle-class mobility, intersecting both with contexts of social mixing and with a historical urban educational inequality, provides a different lens through which to understand youth activism. This article seeks to analyse the linkages between these spatialities of public education and different geographies of youth activism as spaces of living together and as practices of solidarity. It reflects on the need for ongoing debates on citizenship education to engage with these geographies of youth activism in order to fully understand the significance of youth political participation within neoliberal market-driven education agendas.
\t
- \tPlease cite this dataset: Hernandez Santibañez, Ivette (2018): Youth Activism in Chile: from urban educational inequalities to experiences of living together and solidarity. SciELO journals. Fileset.
+ \tPlease cite this dataset: Hernandez Santibañez, Ivette (2018): Youth Activism in Chile: from urban educational inequalities to experiences of living together and solidarity. SciELO journals. Dataset. https://doi.org/10.6084/m9.figshare.6504206.v1
\t\"\"\",
\tAny[\"https://ndownloader.figshare.com/files/11960399\", \"https://ndownloader.figshare.com/files/11960405\", \"https://ndownloader.figshare.com/files/11960411\", \"https://ndownloader.figshare.com/files/11960414\"],
\t[(md5, \"5b82eb513b794371a77b7c738ef24443\"), (md5, \"c1ba6354972849e73b10adea69df2c9f\"), (md5, \"1a7924b6cb539b955357bcebad108ca5\"), (md5, \"0b4e0eebea74024ee0b84b9a2ec26b44\")]
))"""
-------------------------------
Chile Activism: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:9
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:147
[3] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:100
[4] test_reference(::String, ::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90
[5] test_reference at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90 [inlined]
[6] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:17 [inlined]
[7] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[8] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:10 [inlined]
[9] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[10] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:9
[11] include(::String) at ./client.jl:439
[12] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[13] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[14] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[15] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[16] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[17] include(::String) at ./client.jl:439
[18] top-level scope at none:6
[19] eval(::Module, ::Any) at ./boot.jl:331
[20] exec_options(::Base.JLOptions) at ./client.jl:264
[21] _start() at ./client.jl:484
[ Info: Generated registration block uses MD5 hashes, the MD5.jl package will be required.
Test for "Figshare from doi.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Identifiers for the 21st century How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data\",
\"\"\"
\tDataset: Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
\tWebsite: https://figshare.com/articles/Identifiers_for_the_21st_century_How_to_design_provision_and_reuse_persistent_identifiers_to_maximize_utility_and_impact_of_life_science_data/5156008
\tAuthor: Julie A. McMurry et al.
\tDate of Publication: 2017-06-29T17:29:50Z
\tLicense: CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/)
\tIn many disciplines, data are highly decentralized across thousands of online databases (repositories, registries, and knowledgebases). Wringing value from such databases depends on the discipline of data science and on the humble bricks and mortar that make integration possible; identifiers are a core component of this integration infrastructure. Drawing on our experience and on work by other groups, we outline 10 lessons we have learned about the identifier qualities and best practices that facilitate large-scale data integration. Specifically, we propose actions that identifier practitioners (database providers) should take in the design, provision and reuse of identifiers. We also outline the important considerations for those referencing identifiers in various circumstances, including by authors and data generators. While the importance and relevance of each lesson will vary by context, there is a need for increased awareness about how to avoid and manage common identifier problems, especially those related to persistence and web-accessibility/resolvability. We focus strongly on web-based identifiers in the life sciences; however, the principles are broadly relevant to other disciplines.
\t
- \tPlease cite this dataset: McMurry, Julie A.; Juty, Nick; Blomberg, Niklas; Burdett, Tony; Conlin, Tom; Conte, Nathalie; et al. (2017): Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. PLOS Biology. Fileset.
+ \tPlease cite this dataset: McMurry, Julie A.; Juty, Nick; Blomberg, Niklas; Burdett, Tony; Conlin, Tom; Conte, Nathalie; et al. (2017): Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. PLOS Biology. Dataset. https://doi.org/10.1371/journal.pbio.2001414
\t\"\"\",
\tAny[\"https://ndownloader.figshare.com/files/8792425\", \"https://ndownloader.figshare.com/files/8792437\", \"https://ndownloader.figshare.com/files/8792482\", \"https://ndownloader.figshare.com/files/8792491\", \"https://ndownloader.figshare.com/files/8792503\", \"https://ndownloader.figshare.com/files/8792536\", \"https://ndownloader.figshare.com/files/8792545\"],
\t[(md5, \"5066bf01417f85028a09a2f4dadcbefe\"), (md5, \"5c3867e33c0d30952a884f1373ce3e21\"), (md5, \"47c7de1501dcba5d2571efc262a5cf3b\"), (md5, \"e9846e7297fa503771dbb6d352b31f99\"), (md5, \"0c46b3705abca5b99265736dcb18bf4d\"), (md5, \"a1220bb16027568a988ca21b86f5db1a\"), (md5, \"d21886f4ea8844823a03217284c34cc8\")]
))"""
-------------------------------
Figshare test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:7
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:147
[3] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:100
[4] test_reference(::String, ::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90
[5] test_reference at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90 [inlined]
[6] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:20 [inlined]
[7] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[8] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/Figshare.jl:9
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[11] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[13] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
Test for "JSONLD_Web Kaggle.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Stack Overflow 2018 Developer Survey\",
\"\"\"
\tDataset: Stack Overflow 2018 Developer Survey
\tWebsite: https://www.kaggle.com/stackoverflow/stack-overflow-2018-developer-survey
\tAuthor: Stack Overflow
\tDate of Publication: May 15, 2018
\tLicense: http://opendatacommons.org/licenses/dbcl/1.0/
\t### Context
\t
\tEach year, we at [Stack Overflow](https://stackoverflow.com/) ask the developer community about everything from their favorite technologies to their job preferences. This year marks the eighth year we’ve published our Annual Developer Survey results—with the largest number of respondents yet. Over 100,000 developers took the 30-minute survey in January 2018.
\t
\tThis year, we covered a few new topics ranging from artificial intelligence to ethics in coding. We also found that underrepresented groups in tech responded to our survey at even lower rates than we would expect from their participation in the workforce. Want to dive into the results yourself and see what you can learn about salaries or machine learning or diversity in tech? We look forward to seeing what you find!
\t
\t### Content
\t
\tThis 2018 Developer Survey results are organized on Kaggle in two tables:
\t
\t**survey_results_public** contains the main survey results, one respondent per row and one column per question
\t
\t**survey_results_schema** contains each column name from the main results along with the question text corresponding to that column
\t
\tThere are 98,855 responses in this public data release. These responses are what we consider “qualified” for analytical purposes based on completion and time spent on the survey and included at least one non-PII question. Approximately 20,000 responses were started but not included here because respondents did not answer enough questions, or only answered questions with personally identifying information. Of the qualified responses, 67,441 completed the entire survey.
\t
\t### Acknowledgements
\t
\tMassive, heartfelt thanks to all Stack Overflow contributors and lurking developers of the world who took part in the survey this year. We value your generous participation more than you know.
\t
\t### Inspiration
\t
\tAt Stack Overflow, we put developers first and want [all developers to feel welcome and included on our site](https://stackoverflow.blog/2018/04/26/stack-overflow-isnt-very-welcoming-its-time-for-that-to-change/). Can we use our annual survey to understand what kinds of users are less likely to identify as part of our community, participate, or feel kinship with fellow developers? Check out [our blog post](https://stackoverflow.blog/2018/05/30/public-data-release-of-stack-overflows-2018-developer-survey) for more details.
\t\"\"\",
- \t[\"https://www.kaggle.com/stackoverflow/stack-overflow-2018-developer-survey/downloads/stack-overflow-2018-developer-survey.zip/2\", \"https://www.kaggle.com/stackoverflow/stack-overflow-2018-developer-survey/downloads/survey_results_public.csv/2\", \"https://www.kaggle.com/stackoverflow/stack-overflow-2018-developer-survey/downloads/survey_results_schema.csv/2\"],
+ \t[\"https://www.kaggle.com/stackoverflow/stack-overflow-2018-developer-survey/download\", \"https://www.kaggle.com/stackoverflow/stack-overflow-2018-developer-survey/download/YoH0aaQhLQ85gRIVMMd6%2Fversions%2FwSCDRt3dxfKNld212j7W%2Ffiles%2Fsurvey_results_public.csv?datasetVersionNumber=2\", \"https://www.kaggle.com/stackoverflow/stack-overflow-2018-developer-survey/download/YoH0aaQhLQ85gRIVMMd6%2Fversions%2FwSCDRt3dxfKNld212j7W%2Ffiles%2Fsurvey_results_schema.csv?datasetVersionNumber=2\"],
))"""
-------------------------------
JSON-LD Web: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/JSONLD.jl:6
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:147
[3] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:100
[4] test_reference(::String, ::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90
[5] test_reference at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90 [inlined]
[6] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/JSONLD.jl:7 [inlined]
[7] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[8] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/JSONLD.jl:7
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[11] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[13] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
JSON-LD DOI: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/JSONLD.jl:17
Got exception outside of a @test
MethodError: no method matching occursin(::Regex, ::Array{Any,1})
Closest candidates are:
occursin(::Regex, !Matched::SubString; offset) at regex.jl:177
occursin(::Regex, !Matched::AbstractString; offset) at regex.jl:172
Stacktrace:
[1] filter_html(::Array{Any,1}) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/utils.jl:66
[2] license(::JSONLD_DOI, ::Dict{String,Any}) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/APIs/JSONLD/JSONLD.jl:46
[3] find_metadata(::JSONLD_DOI, ::String, ::Nothing) at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:75
[4] #generate#7 at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined]
[5] generate at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/src/generate.jl:25 [inlined] (repeats 2 times)
[6] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/JSONLD.jl:18 [inlined]
[7] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[8] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/JSONLD.jl:18
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[11] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[13] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
Test for "Combining Ecology.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
- \"Data from Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation\",
+ \"Data from Ecology and genomics of an important crop wild relative as a
+ prelude to agricultural innovation\",
\"\"\"
- \tDataset: Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation
- \tWebsite: http://dx.doi.org/10.5061/dryad.74699
- \tAuthor: von Wettberg, Eric J. B. et al.
- \tDate of Publication: 2018-02-27T21:46:38
- \tLicense: https://creativecommons.org/publicdomain/zero/1.0/
+ \tDataset: Data from: Ecology and genomics of an important crop wild relative as a
+ \tprelude to agricultural innovation
+ \tWebsite: https://doi.org/10.5061/dryad.74699
+ \tAuthor: Eric J. B. Von Wettberg et al.
+ \tDate of Publication: 2018
+ \tLicense: https://creativecommons.org/publicdomain/zero/1.0
- \tDomesticated species are impacted in unintended ways during domestication and breeding. Changes in the nature and intensity of selection impart genetic drift, reduce diversity, and increase the frequency of deleterious alleles. Such outcomes constrain our ability to expand the cultivation of crops into environments that differ from those under which domestication occurred. We address this need in chickpea, an important pulse legume, by harnessing the diversity of wild crop relatives. We document an extreme domestication-related genetic bottleneck and decipher the genetic history of wild populations. We provide evidence of ancestral adaptations for seed coat color crypsis, estimate the impact of environment on genetic structure and trait values, and demonstrate variation between wild and cultivated accessions for agronomic properties. A resource of genotyped, association mapping progeny functionally links the wild and cultivated gene pools and is an essential resource chickpea for improvement, while our methods inform collection of other wild crop progenitor species.
- \t
- \tPlease cite this paper: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L. B., Moenga, S. M., … Cook, D. R. (2018). Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation. Nature Communications, 9(1). doi:10.1038/s41467-018-02867-z
+ \tDomesticated species are impacted in unintended ways during domestication
+ \tand breeding. Changes in the nature and intensity of selection impart
+ \tgenetic drift, reduce diversity, and increase the frequency of deleterious
+ \talleles. Such outcomes constrain our ability to expand the cultivation of
+ \tcrops into environments that differ from those under which domestication
+ \toccurred. We address this need in chickpea, an important pulse legume, by
+ \tharnessing the diversity of wild crop relatives. We document an extreme
+ \tdomestication-related genetic bottleneck and decipher the genetic history
+ \tof wild populations. We provide evidence of ancestral adaptations for seed
+ \tcoat color crypsis, estimate the impact of environment on genetic
+ \tstructure and trait values, and demonstrate variation between wild and
+ \tcultivated accessions for agronomic properties. A resource of genotyped,
+ \tassociation mapping progeny functionally links the wild and cultivated
+ \tgene pools and is an essential resource chickpea for improvement, while
+ \tour methods inform collection of other wild crop progenitor species.
\t
- \tPlease cite this dataset: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L., Moenga, S. M., … Cook, D. R. (2018). Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.74699
+ \tPlease cite this dataset: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L., Moenga, S. M., … Cook, D. R. (2018). <i>Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation</i> [Data set]. Dryad. https://doi.org/10.5061/DRYAD.74699
\t\"\"\",
- \tAny[\"/bitstream/handle/10255/dryad.166590/draft_dryad_upload_dec2017.xls?sequence=1\"],
- \t[(md5, \"3c837a0a41e01966a0f037beb7db43b8\")]
+ \tmissing,
))"""
-------------------------------
Combining test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/combine.jl:6
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:147
[3] test_reference(::FileIO.File{FileIO.DataFormat{:TXT}}, ::String, ::Nothing, ::Nothing) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:100
[4] test_reference(::String, ::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90
[5] test_reference at /home/pkgeval/.julia/packages/ReferenceTests/SsfvK/src/test_reference.jl:90 [inlined]
[6] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/combine.jl:7 [inlined]
[7] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[8] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/combine.jl:7
[9] include(::String) at ./client.jl:439
[10] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[11] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:22 [inlined]
[13] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1116 [inlined]
[14] top-level scope at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:20
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
Test Summary: | Pass Fail Error Total
DataDepGenerators | 19 1 15 35
format_checksum | 5 5
citation_generation | 1 1 2
UCI | 7 1 8
UCI Air Quality | 1 1 2
Integration Test | 1 1
ForestFires | 2 2
GitHub | 5 2 7
fivethirtyeight (folders in 1 repo) | 3 1 4
538 March | 1 1 2
Integration Test | 1 1
BuzzFeedNews (whole repos) | 2 1 3
Pres Camp | 1 1 2
Integration Test | 1 1
DataDryad | 1 1
DataDryad test | 1 1
DataOneV1 | 1 1
DataOneV1 test | 1 1
DataOneV2/KNB | No tests
DataOneV2/TERN | 1 1
TERN test | 1 1
CKAN | 1 2 3
CKAN Demo test | 1 1
data.gov test | 1 1
data.gov.au test | 1 1
DataCite | 1 1
DataCite test | 1 1
Figshare | 3 3
Figshare test | 3 3
Chile Activism | 2 2
Integration Test | 1 1
JSONLD | 2 2
JSON-LD Web | 1 1
JSON-LD DOI | 1 1
combine | 1 1
Combining test | 1 1
ERROR: LoadError: Some tests did not pass: 19 passed, 1 failed, 15 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl:19
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/DataDepsGenerators/CbcdV/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package DataDepsGenerators errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:12