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1.5.0-DEV-13d1bd4689.log
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1.5.0-DEV-13d1bd4689.log
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Julia Version 1.5.0-DEV.0
Commit 13d1bd4689 (2019-12-31 18:18 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed Reexport ───────────── v0.2.0
Installed DataAPI ────────────── v1.1.0
Installed OptimBase ──────────── v2.0.0
Installed Compat ─────────────── v2.2.0
Installed Rmath ──────────────── v0.6.0
Installed DiffResults ────────── v1.0.2
Installed LsqFit ─────────────── v0.9.0
Installed DataStructures ─────── v0.17.6
Installed OrderedCollections ─── v1.1.0
Installed NaNMath ────────────── v0.3.3
Installed Arpack ─────────────── v0.4.0
Installed CommonSubexpressions ─ v0.2.0
Installed Requires ───────────── v1.0.0
Installed StatsFuns ──────────── v0.9.3
Installed ForwardDiff ────────── v0.10.8
Installed DiffRules ──────────── v1.0.0
Installed Arpack_jll ─────────── v3.5.0+2
Installed OpenBLAS_jll ───────── v0.3.7+2
Installed BinaryProvider ─────── v0.5.8
Installed DiffEqDiffTools ────── v1.7.0
Installed Calculus ───────────── v0.5.1
Installed SpecialFunctions ───── v0.9.0
Installed SortingAlgorithms ──── v0.3.1
Installed FillArrays ─────────── v0.8.2
Installed StaticArrays ───────── v0.12.1
Installed QuadGK ─────────────── v2.3.1
Installed PDMats ─────────────── v0.9.10
Installed StatsBase ──────────── v0.32.0
Installed Missings ───────────── v0.4.3
Installed ArrayInterface ─────── v2.3.1
Installed OpenSpecFun_jll ────── v0.5.3+1
Installed NLSolversBase ──────── v7.5.0
Installed Distributions ──────── v0.21.11
Updating `~/.julia/environments/v1.5/Project.toml`
[2fda8390] + LsqFit v0.9.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.6
[01453d9d] + DiffEqDiffTools v1.7.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[31c24e10] + Distributions v0.21.11
[1a297f60] + FillArrays v0.8.2
[f6369f11] + ForwardDiff v0.10.8
[2fda8390] + LsqFit v0.9.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[4536629a] + OpenBLAS_jll v0.3.7+2
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[87e2bd06] + OptimBase v2.0.0
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[1fd47b50] + QuadGK v2.3.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_Lmn9n5/Project.toml`
[no changes]
Updating `/tmp/jl_Lmn9n5/Manifest.toml`
[no changes]
Testing LsqFit
Updating `/tmp/jl_gCSXap/Project.toml`
[no changes]
Updating `/tmp/jl_gCSXap/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_gCSXap/Project.toml`
[49dc2e85] Calculus v0.5.1
[31c24e10] Distributions v0.21.11
[f6369f11] ForwardDiff v0.10.8
[2fda8390] LsqFit v0.9.0
[d41bc354] NLSolversBase v7.5.0
[87e2bd06] OptimBase v2.0.0
[2913bbd2] StatsBase v0.32.0
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[8dfed614] Test
Running tests:
* curve_fit.jl
norm(fit.param - [1.0, 2.0]) < 0.05 ? 0.000887455733737258
norm(errors - [0.017, 0.075]) < 0.1 ?0.07271313875916048
norm(fit.param - [1.0, 2.0]) < 0.05 ? 0.0008874557336550121
* levenberg_marquardt.jl
0 4.093196e+03 NaN
* lambda: 10.0
1 2.798224e+03 5.199044e+02
* g(x): 519.9043679445409
* lambda: 1.0
* dx: [-1.375371948380874, -2.2684899265353144, -0.5169191140257934]
2 4.992133e+02 2.193666e+02
* g(x): 219.36656868597166
* lambda: 0.1
* dx: [-3.3345282071803815, -5.791990282749065, -2.0025033828228893]
3 9.266003e+00 2.104323e+01
* g(x): 21.043228273547598
* lambda: 0.010000000000000002
* dx: [-0.15734860978655202, 1.5303269457670934, -2.127920921191808]
4 9.815963e-01 3.012647e-01
* g(x): 0.301264725530781
* lambda: 0.0010000000000000002
* dx: [-0.0853384751923125, 1.4220761006071856, -0.34409676803907335]
5 9.379170e-01 7.194056e-03
* g(x): 0.00719405604635559
* lambda: 0.00010000000000000003
* dx: [0.057730109360346046, 0.09515204853325294, -0.017190659766938208]
6 9.379163e-01 7.827368e-07
* g(x): 7.827368158352943e-7
* lambda: 1.0000000000000004e-5
* dx: [0.0002587384972713001, -0.0001437613348680099, -8.199125275882894e-5]
7 9.379163e-01 7.419676e-12
* g(x): 7.419675984721152e-12
* lambda: 1.0000000000000004e-6
* dx: [9.769111401529394e-8, -9.595570041981478e-8, -7.418886934437318e-9]
Test Summary: | Pass Total
optimization | 10 10
* curve_fit_inplace.jl
--------------
Performance of non-inplace
Evaluation function
0.542583 seconds (11.71 k allocations: 69.323 MiB, 55.91% gc time)
Jacobian function
0.209465 seconds (56 allocations: 68.667 MiB, 1.78% gc time)
--------------
Performance of inplace
Evaluation function
0.152980 seconds (38 allocations: 1.156 KiB)
Jacobian function
0.179465 seconds (38 allocations: 1.578 KiB)
--------------
Performance of curve_fit
Non-inplace
2.745355 seconds (338 allocations: 442.521 MiB, 15.88% gc time)
Inplace
1.981050 seconds (141 allocations: 68.673 MiB, 0.07% gc time)
Non-inplace with jacobian
1.450884 seconds (187 allocations: 171.672 MiB, 0.17% gc time)
Inplace with jacobian
1.440565 seconds (131 allocations: 38.155 MiB)
--------------
Performance of curve_fit with weights
Non-inplace with weights
1.912252 seconds (81.99 k allocations: 297.540 MiB, 0.42% gc time)
Inplace with weights
2.620476 seconds (150 allocations: 80.117 MiB)
Non-inplace with jacobian with weights
2.087244 seconds (235 allocations: 293.744 MiB, 15.70% gc time)
Inplace with jacobian with weights
1.340087 seconds (137 allocations: 41.970 MiB)
* geodesic.jl
--------------
Performance of curve_fit vs geo
Non-inplace
0.410159 seconds (187 allocations: 17.176 MiB, 26.65% gc time)
Geodesic
0.101174 seconds (127 allocations: 11.833 MiB)
Geodesic - auto avv!
0.268141 seconds (200.17 k allocations: 24.043 MiB, 6.44% gc time)
--------------
Performance of curve_fit vs geo with weights
Non-inplace
0.405052 seconds (234 allocations: 29.385 MiB, 8.48% gc time)
Geodesic
0.359593 seconds (194 allocations: 24.043 MiB)
Geodesic - auto avv!
0.942773 seconds (300.26 k allocations: 42.358 MiB, 3.92% gc time)
Testing LsqFit tests passed