1.5.0-DEV-13d1bd4689.log

Julia Version 1.5.0-DEV.0
Commit 13d1bd4689 (2019-12-31 18:18 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia

 Resolving package versions...
 Installed DataAPI ───────────────────── v1.1.0
 Installed Conda ─────────────────────── v1.3.0
 Installed Blosc ─────────────────────── v0.5.1
 Installed Compat ────────────────────── v2.2.0
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed ArgParse ──────────────────── v0.6.2
 Installed DataStructures ────────────── v0.17.6
 Installed MLSuite ───────────────────── v0.1.4
 Installed VersionParsing ────────────── v1.2.0
 Installed OrderedCollections ────────── v1.1.0
 Installed MacroTools ────────────────── v0.5.3
 Installed TimerOutputs ──────────────── v0.5.3
 Installed Parsers ───────────────────── v0.3.10
 Installed MLSuiteBase ───────────────── v0.1.0
 Installed PyCallUtils ───────────────── v0.2.1
 Installed Iconv ─────────────────────── v0.1.0
 Installed BinaryProvider ────────────── v0.5.8
 Installed JSON ──────────────────────── v0.21.0
 Installed Requires ──────────────────── v0.5.2
 Installed TableTraits ───────────────── v1.0.0
 Installed URIParser ─────────────────── v0.4.0
 Installed ProgressMeter ─────────────── v1.2.0
 Installed FillArrays ────────────────── v0.7.4
 Installed DataValueInterfaces ───────── v1.0.0
 Installed PyCall ────────────────────── v1.91.2
 Installed CMake ─────────────────────── v1.1.2
 Installed DataValues ────────────────── v0.4.12
 Installed HDF5 ──────────────────────── v0.12.5
 Installed PandasLite ────────────────── v0.1.2
 Installed CMakeWrapper ──────────────── v0.2.3
 Installed BSON ──────────────────────── v0.2.4
 Installed TableTraitsUtils ──────────── v1.0.1
 Installed HDF5Utils ─────────────────── v0.1.9
 Installed BinDeps ───────────────────── v1.0.0
 Installed ScikitLearnBase ───────────── v0.5.0
 Installed TextWrap ──────────────────── v0.3.0
 Installed Missings ──────────────────── v0.4.3
 Installed SVMLightWriter ────────────── v0.1.0
 Installed Parameters ────────────────── v0.12.0
 Installed Glob ──────────────────────── v1.2.0
  Updating `~/.julia/environments/v1.5/Project.toml`
  [fd36aebc] + MLSuite v0.1.4
  Updating `~/.julia/environments/v1.5/Manifest.toml`
  [c7e460c6] + ArgParse v0.6.2
  [fbb218c0] + BSON v0.2.4
  [9e28174c] + BinDeps v1.0.0
  [b99e7846] + BinaryProvider v0.5.8
  [a74b3585] + Blosc v0.5.1
  [631607c0] + CMake v1.1.2
  [d5fb7624] + CMakeWrapper v0.2.3
  [34da2185] + Compat v2.2.0
  [8f4d0f93] + Conda v1.3.0
  [9a962f9c] + DataAPI v1.1.0
  [864edb3b] + DataStructures v0.17.6
  [e2d170a0] + DataValueInterfaces v1.0.0
  [e7dc6d0d] + DataValues v0.4.12
  [1a297f60] + FillArrays v0.7.4
  [c27321d9] + Glob v1.2.0
  [f67ccb44] + HDF5 v0.12.5
  [2ec8e600] + HDF5Utils v0.1.9
  [f60d2a9e] + Iconv v0.1.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [fd36aebc] + MLSuite v0.1.4
  [d01462b0] + MLSuiteBase v0.1.0
  [1914dd2f] + MacroTools v0.5.3
  [e1d29d7a] + Missings v0.4.3
  [bac558e1] + OrderedCollections v1.1.0
  [f5117550] + PandasLite v0.1.2
  [d96e819e] + Parameters v0.12.0
  [69de0a69] + Parsers v0.3.10
  [92933f4c] + ProgressMeter v1.2.0
  [438e738f] + PyCall v1.91.2
  [02651160] + PyCallUtils v0.2.1
  [ae029012] + Requires v0.5.2
  [b51eda20] + SVMLightWriter v0.1.0
  [6e75b9c4] + ScikitLearnBase v0.5.0
  [3783bdb8] + TableTraits v1.0.0
  [382cd787] + TableTraitsUtils v1.0.1
  [b718987f] + TextWrap v0.3.0
  [a759f4b9] + TimerOutputs v0.5.3
  [30578b45] + URIParser v0.4.0
  [81def892] + VersionParsing v1.2.0
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building Conda ──→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
  Updating `/tmp/jl_046HqC/Project.toml`
 [no changes]
  Updating `/tmp/jl_046HqC/Manifest.toml`
 [no changes]
  Building PyCall ─→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
  Updating `/tmp/jl_P3w0Jy/Project.toml`
 [no changes]
  Updating `/tmp/jl_P3w0Jy/Manifest.toml`
 [no changes]
  Building CMake ──→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
  Updating `/tmp/jl_YDslNX/Project.toml`
 [no changes]
  Updating `/tmp/jl_YDslNX/Manifest.toml`
 [no changes]
  Building Blosc ──→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
  Updating `/tmp/jl_fAkM5U/Project.toml`
 [no changes]
  Updating `/tmp/jl_fAkM5U/Manifest.toml`
 [no changes]
  Building HDF5 ───→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
  Updating `/tmp/jl_gyZw7V/Project.toml`
 [no changes]
  Updating `/tmp/jl_gyZw7V/Manifest.toml`
 [no changes]
  Building MLSuite → `~/.julia/packages/MLSuite/XB0nd/deps/build.log`
  Updating `/tmp/jl_1pK5Aj/Project.toml`
 [no changes]
  Updating `/tmp/jl_1pK5Aj/Manifest.toml`
 [no changes]
┌ Error: Error building `MLSuite`: 
│ /usr/bin/python3: No module named pip
│ ERROR: LoadError: failed process: Process(`python3 -m pip install scikit-learn pandas h2o lightgbm xgboost unidecode pyarrow thundersvm treelite`, ProcessExited(1)) [1]
│ 
│ Stacktrace:
│  [1] pipeline_error at ./process.jl:525 [inlined]
│  [2] run(::Cmd; wait::Bool) at ./process.jl:440
│  [3] run(::Cmd) at ./process.jl:438
│  [4] top-level scope at /home/pkgeval/.julia/packages/MLSuite/XB0nd/deps/build.jl:13
│  [5] include(::String) at ./client.jl:439
│  [6] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/MLSuite/XB0nd/deps/build.jl:13
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:883
   Testing MLSuite
  Updating `/tmp/jl_Evsxck/Project.toml`
 [no changes]
  Updating `/tmp/jl_Evsxck/Manifest.toml`
 [no changes]
Running sandbox
Status `/tmp/jl_Evsxck/Project.toml`
  [c7e460c6] ArgParse v0.6.2
  [fbb218c0] BSON v0.2.4
  [9e28174c] BinDeps v1.0.0
  [864edb3b] DataStructures v0.17.6
  [f67ccb44] HDF5 v0.12.5
  [2ec8e600] HDF5Utils v0.1.9
  [f60d2a9e] Iconv v0.1.0
  [fd36aebc] MLSuite v0.1.4
  [d01462b0] MLSuiteBase v0.1.0
  [f5117550] PandasLite v0.1.2
  [d96e819e] Parameters v0.12.0
  [92933f4c] ProgressMeter v1.2.0
  [438e738f] PyCall v1.91.2
  [02651160] PyCallUtils v0.2.1
  [ae029012] Requires v0.5.2
  [b51eda20] SVMLightWriter v0.1.0
  [6e75b9c4] ScikitLearnBase v0.5.0
  [a759f4b9] TimerOutputs v0.5.3
  [8bb1440f] DelimitedFiles 
  [8ba89e20] Distributed 
  [37e2e46d] LinearAlgebra 
  [a63ad114] Mmap 
  [44cfe95a] Pkg 
  [de0858da] Printf 
  [9a3f8284] Random 
  [2f01184e] SparseArrays 
  [10745b16] Statistics 
  [8dfed614] Test 
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:45.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:46.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:48.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:49.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:50.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:51.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:52.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:53.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:56.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/pyiterator.jl:144 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:56.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:48.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:49.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:335 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:45.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:50.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:51.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:52.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:344 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:46.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:53.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition (::Type{PyCall.PyObject})(Base.Colon) in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/8LLTL/src/PyCallUtils.jl:38 overwritten in module PandasLite at /home/pkgeval/.julia/packages/PandasLite/qvpze/src/PandasLite.jl:115.
  ** incremental compilation may be fatally broken for this module **

ERROR: LoadError: InitError: PyError (PyImport_ImportModule

The Python package pandas could not be found by pyimport. Usually this means
that you did not install pandas in the Python version being used by PyCall.

PyCall is currently configured to use the Python version at:

/usr/bin/python3

and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the pandas module.

One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.

Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia.  As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the pandas module, you can use `pyimport_conda("pandas", PKG)`,
where PKG is the Anaconda package the contains the module pandas,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).

) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'pandas'",)

Stacktrace:
 [1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
 [2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
 [3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
 [4] __init__() at /home/pkgeval/.julia/packages/PandasLite/qvpze/src/PandasLite.jl:18
 [5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
 [6] _require_from_serialized(::String) at ./loading.jl:748
 [7] _require(::Base.PkgId) at ./loading.jl:1039
 [8] require(::Base.PkgId) at ./loading.jl:927
 [9] require(::Module, ::Symbol) at ./loading.jl:922
 [10] include(::Module, ::String) at ./Base.jl:377
 [11] top-level scope at none:2
 [12] eval at ./boot.jl:331 [inlined]
 [13] eval(::Expr) at ./client.jl:449
 [14] top-level scope at ./none:3
during initialization of module PandasLite
in expression starting at /home/pkgeval/.julia/packages/MLSuite/XB0nd/src/MLSuite.jl:7
ERROR: LoadError: Failed to precompile MLSuite [fd36aebc-0777-11ea-1be3-eb1bdc5c01e1] to /home/pkgeval/.julia/compiled/v1.5/MLSuite/fNOFY_Hmkdr.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
 [3] _require(::Base.PkgId) at ./loading.jl:1029
 [4] require(::Base.PkgId) at ./loading.jl:927
 [5] require(::Module, ::Symbol) at ./loading.jl:922
 [6] include(::String) at ./client.jl:439
 [7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/MLSuite/XB0nd/test/runtests.jl:1
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])

cd("/home/pkgeval/.julia/packages/MLSuite/XB0nd/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/MLSuite/XB0nd/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package MLSuite errored during testing
Stacktrace:
 [1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
 [2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
 [3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
 [4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
 [5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
 [6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
 [7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
 [8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
 [9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
 [10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
 [11] top-level scope at none:12