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1.5.0-DEV-13d1bd4689.log
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1.5.0-DEV-13d1bd4689.log
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Julia Version 1.5.0-DEV.0
Commit 13d1bd4689 (2019-12-31 18:18 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed Reexport ──────────────────── v0.2.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed DataAPI ───────────────────── v1.1.0
Installed Conda ─────────────────────── v1.3.0
Installed Compat ────────────────────── v2.2.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PyRhodium ─────────────────── v0.1.0
Installed DataStructures ────────────── v0.17.6
Installed Rmath ─────────────────────── v0.6.0
Installed VersionParsing ────────────── v1.2.0
Installed MacroTools ────────────────── v0.5.3
Installed OrderedCollections ────────── v1.1.0
Installed FixedPointNumbers ─────────── v0.7.0
Installed PyPlot ────────────────────── v2.8.2
Installed Parsers ───────────────────── v0.3.10
Installed InvertedIndices ───────────── v1.0.0
Installed Arpack ────────────────────── v0.4.0
Installed StatsFuns ─────────────────── v0.9.3
Installed Requires ──────────────────── v1.0.0
Installed Tables ────────────────────── v0.2.11
Installed Arpack_jll ────────────────── v3.5.0+2
Installed TableTraits ───────────────── v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed OpenBLAS_jll ──────────────── v0.3.7+2
Installed BinaryProvider ────────────── v0.5.8
Installed FillArrays ────────────────── v0.8.2
Installed DataValueInterfaces ───────── v1.0.0
Installed PyCall ────────────────────── v1.91.2
Installed DataFrames ────────────────── v0.20.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed SpecialFunctions ──────────── v0.9.0
Installed ColorTypes ────────────────── v0.9.0
Installed DataValues ────────────────── v0.4.12
Installed TableTraitsUtils ──────────── v1.0.1
Installed PooledArrays ──────────────── v0.5.3
Installed PDMats ────────────────────── v0.9.10
Installed QuadGK ────────────────────── v2.3.1
Installed Missings ──────────────────── v0.4.3
Installed StatsBase ─────────────────── v0.32.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed IterableTables ────────────── v1.0.0
Installed Colors ────────────────────── v0.11.1
Installed Distributions ─────────────── v0.21.11
Installed CategoricalArrays ─────────── v0.7.5
Updating `~/.julia/environments/v1.5/Project.toml`
[e525b322] + PyRhodium v0.1.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[b99e7846] + BinaryProvider v0.5.8
[324d7699] + CategoricalArrays v0.7.5
[3da002f7] + ColorTypes v0.9.0
[5ae59095] + Colors v0.11.1
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.12
[31c24e10] + Distributions v0.21.11
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.7.0
[41ab1584] + InvertedIndices v1.0.0
[1c8ee90f] + IterableTables v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[1914dd2f] + MacroTools v0.5.3
[e1d29d7a] + Missings v0.4.3
[4536629a] + OpenBLAS_jll v0.3.7+2
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.3
[438e738f] + PyCall v1.91.2
[d330b81b] + PyPlot v2.8.2
[e525b322] + PyRhodium v0.1.0
[1fd47b50] + QuadGK v2.3.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v0.2.11
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_nzywbT/Project.toml`
[no changes]
Updating `/tmp/jl_nzywbT/Manifest.toml`
[no changes]
Building Rmath ────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_qBKxfF/Project.toml`
[no changes]
Updating `/tmp/jl_qBKxfF/Manifest.toml`
[no changes]
Building PyCall ───→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_d4u4QZ/Project.toml`
[no changes]
Updating `/tmp/jl_d4u4QZ/Manifest.toml`
[no changes]
Building PyRhodium → `~/.julia/packages/PyRhodium/aU37D/deps/build.log`
Updating `/tmp/jl_eIVSLO/Project.toml`
[no changes]
Updating `/tmp/jl_eIVSLO/Manifest.toml`
[no changes]
Testing PyRhodium
Installed Roots ─ v0.8.4
Updating `/tmp/jl_vCSld9/Project.toml`
[f2b01f46] + Roots v0.8.4
Updating `/tmp/jl_vCSld9/Manifest.toml`
[f2b01f46] + Roots v0.8.4
Running sandbox
Status `/tmp/jl_vCSld9/Project.toml`
[8f4d0f93] Conda v1.3.0
[a93c6f00] DataFrames v0.20.0
[864edb3b] DataStructures v0.17.6
[31c24e10] Distributions v0.21.11
[1c8ee90f] IterableTables v1.0.0
[438e738f] PyCall v1.91.2
[d330b81b] PyPlot v2.8.2
[e525b322] PyRhodium v0.1.0
[f2b01f46] Roots v0.8.4
[9a3f8284] Random
[8dfed614] Test
┌ Warning: No working GUI backend found for matplotlib
└ @ PyPlot ~/.julia/packages/PyPlot/4wzW1/src/init.jl:165
┌ Warning: No working GUI backend found for matplotlib
└ @ PyPlot ~/.julia/packages/PyPlot/4wzW1/src/init.jl:165
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package rhodium could not be found by pyimport. Usually this means
that you did not install rhodium in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the rhodium module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the rhodium module, you can use `pyimport_conda("rhodium", PKG)`,
where PKG is the Anaconda package the contains the module rhodium,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'rhodium'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] __init__() at /home/pkgeval/.julia/packages/PyRhodium/aU37D/src/PyRhodium.jl:26
[3] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[4] _require_from_serialized(::String) at ./loading.jl:748
[5] _require(::Base.PkgId) at ./loading.jl:1039
[6] require(::Base.PkgId) at ./loading.jl:927
[7] require(::Module, ::Symbol) at ./loading.jl:922
[8] include(::String) at ./client.jl:439
[9] top-level scope at none:6
during initialization of module PyRhodium
in expression starting at /home/pkgeval/.julia/packages/PyRhodium/aU37D/test/runtests.jl:1
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/PyRhodium/aU37D/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/PyRhodium/aU37D/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package PyRhodium errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:12