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1.5.0-DEV-13d1bd4689.log
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Julia Version 1.5.0-DEV.0
Commit 13d1bd4689 (2019-12-31 18:18 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed AxisAlgorithms ──────────────── v1.0.0
Installed RoMEPlotting ────────────────── v0.1.8
Installed Libffi_jll ──────────────────── v3.2.1+0
Installed Tables ──────────────────────── v0.2.11
Installed Loess ───────────────────────── v0.5.0
Installed Inflate ─────────────────────── v0.1.1
Installed MbedTLS ─────────────────────── v0.7.0
Installed NLsolve ─────────────────────── v4.2.0
Installed Arpack_jll ──────────────────── v3.5.0+2
Installed Requires ────────────────────── v0.5.2
Installed FFTW ────────────────────────── v1.2.0
Installed TableTraits ─────────────────── v1.0.0
Installed Cairo_jll ───────────────────── v1.16.0+2
Installed IndirectArrays ──────────────── v0.5.1
Installed JSON ────────────────────────── v0.21.0
Installed Showoff ─────────────────────── v0.3.1
Installed TranscodingStreams ──────────── v0.9.5
Installed Calculus ────────────────────── v0.5.1
Installed WoodburyMatrices ────────────── v0.4.1
Installed Distances ───────────────────── v0.8.2
Installed Fontconfig ──────────────────── v0.3.0
Installed KernelDensityEstimatePlotting ─ v0.1.6
Installed CoupledFields ───────────────── v0.1.0
Installed GraphPlot ───────────────────── v0.3.1
Installed StaticArrays ────────────────── v0.12.1
Installed Xorg_libpthread_stubs_jll ───── v0.1.0+0
Installed Missings ────────────────────── v0.4.3
Installed Xorg_xcb_proto_jll ──────────── v1.13.0+0
Installed Xorg_renderproto_jll ────────── v0.11.1+0
Installed FunctionalStateMachine ──────── v0.1.3
Installed HarfBuzz_jll ────────────────── v2.6.1+4
Installed DiffResults ─────────────────── v1.0.2
Installed Colors ──────────────────────── v0.9.6
Installed FriBidi_jll ─────────────────── v1.0.5+2
Installed DataStructures ──────────────── v0.17.6
Installed DataAPI ─────────────────────── v1.1.0
Installed Gettext_jll ─────────────────── v0.20.1+1
Installed X11_jll ─────────────────────── v1.6.8+4
Installed CoordinateTransformations ───── v0.5.0
Installed MacroTools ──────────────────── v0.5.3
Installed NaNMath ─────────────────────── v0.3.3
Installed Rmath ───────────────────────── v0.6.0
Installed Rotations ───────────────────── v0.13.0
Installed PCRE_jll ────────────────────── v8.42.0+1
Installed JSON2 ───────────────────────── v0.3.1
Installed DiffRules ───────────────────── v1.0.0
Installed FreeType2_jll ───────────────── v2.10.1+1
Installed Xorg_inputproto_jll ─────────── v2.3.2+0
Installed Pango_jll ───────────────────── v1.42.4+7
Installed AbstractFFTs ────────────────── v0.5.0
Installed LightGraphs ─────────────────── v1.3.0
Installed Media ───────────────────────── v0.5.0
Installed DiffEqDiffTools ─────────────── v1.7.0
Installed ProgressMeter ───────────────── v1.2.0
Installed LineSearches ────────────────── v7.0.1
Installed Measures ────────────────────── v0.3.1
Installed Libuuid_jll ─────────────────── v2.34.0+3
Installed Graphs ──────────────────────── v0.10.3
Installed Bzip2_jll ───────────────────── v1.0.6+1
Installed HTTP ────────────────────────── v0.8.8
Installed IncrementalInference ────────── v0.8.3
Installed ColorTypes ──────────────────── v0.8.1
Installed QuadGK ──────────────────────── v2.3.1
Installed ArnoldiMethod ───────────────── v0.0.4
Installed Libgpg_error_jll ────────────── v1.36.0+0
Installed Contour ─────────────────────── v0.5.1
Installed Parameters ──────────────────── v0.12.0
Installed Xorg_libxcb_jll ─────────────── v1.13.0+0
Installed Xorg_libXau_jll ─────────────── v1.0.9+0
Installed Hexagons ────────────────────── v0.2.0
Installed RoME ────────────────────────── v0.5.3
Installed CategoricalArrays ───────────── v0.7.5
Installed Reexport ────────────────────── v0.2.0
Installed Compat ──────────────────────── v2.2.0
Installed KernelDensityEstimate ───────── v0.5.2
Installed Ratios ──────────────────────── v0.3.1
Installed DocStringExtensions ─────────── v0.8.1
Installed Parsers ─────────────────────── v0.3.10
Installed TransformUtils ──────────────── v0.2.2
Installed Glib_jll ────────────────────── v2.59.0+1
Installed Compose ─────────────────────── v0.8.0
Installed StatsFuns ───────────────────── v0.9.3
Installed InvertedIndices ─────────────── v1.0.0
Installed Xorg_kbproto_jll ────────────── v1.0.7+0
Installed ForwardDiff ─────────────────── v0.10.8
Installed CodecZlib ───────────────────── v0.6.0
Installed BinaryProvider ──────────────── v0.5.8
Installed Xorg_xproto_jll ─────────────── v7.0.31+0
Installed OffsetArrays ────────────────── v0.11.4
Installed Xorg_libXext_jll ────────────── v1.3.4+0
Installed Interpolations ──────────────── v0.12.5
Installed DataFrames ──────────────────── v0.20.0
Installed DistributedFactorGraphs ─────── v0.5.2
Installed FillArrays ──────────────────── v0.8.2
Installed DataValueInterfaces ─────────── v1.0.0
Installed SpecialFunctions ────────────── v0.9.0
Installed Xorg_util_macros_jll ────────── v1.19.2+0
Installed JLD2 ────────────────────────── v0.1.10
Installed MKL_jll ─────────────────────── v2019.0.117+0
Installed FileIO ──────────────────────── v1.2.1
Installed Graphics ────────────────────── v1.0.1
Installed XML2_jll ────────────────────── v2.9.9+1
Installed Neo4j ───────────────────────── v2.0.0
Installed IniFile ─────────────────────── v0.5.0
Installed KernelDensity ───────────────── v0.5.1
Installed XSLT_jll ────────────────────── v1.1.33+0
Installed Graphite2_jll ───────────────── v1.3.13+1
Installed Libiconv_jll ────────────────── v1.16.0+0
Installed Xorg_xtrans_jll ─────────────── v1.4.0+0
Installed Xorg_libXrender_jll ─────────── v0.9.10+0
Installed Xorg_libX11_jll ─────────────── v1.6.8+0
Installed IteratorInterfaceExtensions ─── v1.0.0
Installed Gadfly ──────────────────────── v1.0.1
Installed libpng_jll ──────────────────── v1.6.37+2
Installed FFTW_jll ────────────────────── v3.3.9+3
Installed Zlib_jll ────────────────────── v1.2.11+7
Installed IterTools ───────────────────── v1.3.0
Installed Libgcrypt_jll ───────────────── v1.8.5+0
Installed OrderedCollections ──────────── v1.1.0
Installed Arpack ──────────────────────── v0.4.0
Installed FixedPointNumbers ───────────── v0.6.1
Installed Pixman_jll ──────────────────── v0.38.4+1
Installed CommonSubexpressions ────────── v0.2.0
Installed OpenBLAS_jll ────────────────── v0.3.7+2
Installed Xorg_libXdmcp_jll ───────────── v1.1.3+0
Installed IntelOpenMP_jll ─────────────── v2018.0.3+0
Installed SortingAlgorithms ───────────── v0.3.1
Installed Fontconfig_jll ──────────────── v2.13.1+8
Installed PooledArrays ────────────────── v0.5.3
Installed Optim ───────────────────────── v0.19.7
Installed PositiveFactorizations ──────── v0.2.3
Installed Expat_jll ───────────────────── v2.2.7+0
Installed PDMats ──────────────────────── v0.9.10
Installed Juno ────────────────────────── v0.7.2
Installed ApproxManifoldProducts ──────── v0.1.2
Installed ArrayInterface ──────────────── v2.3.1
Installed StatsBase ───────────────────── v0.32.0
Installed LZO_jll ─────────────────────── v2.10.0+0
Installed OpenSpecFun_jll ─────────────── v0.5.3+1
Installed SimpleTraits ────────────────── v0.9.1
Installed NLSolversBase ───────────────── v7.5.0
Installed Distributions ───────────────── v0.21.11
Installed Cairo ───────────────────────── v1.0.2
Installed Xorg_xextproto_jll ──────────── v7.3.0+0
Updating `~/.julia/environments/v1.5/Project.toml`
[238d586b] + RoMEPlotting v0.1.8
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[9bbbb610] + ApproxManifoldProducts v0.1.2
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[13072b0f] + AxisAlgorithms v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[6e34b625] + Bzip2_jll v1.0.6+1
[159f3aea] + Cairo v1.0.2
[83423d85] + Cairo_jll v1.16.0+2
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.5
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.8.1
[5ae59095] + Colors v0.9.6
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[a81c6b42] + Compose v0.8.0
[d38c429a] + Contour v0.5.1
[150eb455] + CoordinateTransformations v0.5.0
[7ad07ef1] + CoupledFields v0.1.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.7.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[b5cc3c7e] + DistributedFactorGraphs v0.5.2
[31c24e10] + Distributions v0.21.11
[ffbed154] + DocStringExtensions v0.8.1
[2e619515] + Expat_jll v2.2.7+0
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[5789e2e9] + FileIO v1.2.1
[1a297f60] + FillArrays v0.8.2
[53c48c17] + FixedPointNumbers v0.6.1
[186bb1d3] + Fontconfig v0.3.0
[a3f928ae] + Fontconfig_jll v2.13.1+8
[f6369f11] + ForwardDiff v0.10.8
[d7e528f0] + FreeType2_jll v2.10.1+1
[559328eb] + FriBidi_jll v1.0.5+2
[3e9e306e] + FunctionalStateMachine v0.1.3
[c91e804a] + Gadfly v1.0.1
[78b55507] + Gettext_jll v0.20.1+1
[7746bdde] + Glib_jll v2.59.0+1
[a2cc645c] + GraphPlot v0.3.1
[a2bd30eb] + Graphics v1.0.1
[3b182d85] + Graphite2_jll v1.3.13+1
[86223c79] + Graphs v0.10.3
[cd3eb016] + HTTP v0.8.8
[2e76f6c2] + HarfBuzz_jll v2.6.1+4
[a1b4810d] + Hexagons v0.2.0
[904591bb] + IncrementalInference v0.8.3
[9b13fd28] + IndirectArrays v0.5.1
[d25df0c9] + Inflate v0.1.1
[83e8ac13] + IniFile v0.5.0
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.5
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.10
[682c06a0] + JSON v0.21.0
[2535ab7d] + JSON2 v0.3.1
[e5e0dc1b] + Juno v0.7.2
[5ab0869b] + KernelDensity v0.5.1
[2472808a] + KernelDensityEstimate v0.5.2
[c43967c8] + KernelDensityEstimatePlotting v0.1.6
[dd4b983a] + LZO_jll v2.10.0+0
[e9f186c6] + Libffi_jll v3.2.1+0
[d4300ac3] + Libgcrypt_jll v1.8.5+0
[7add5ba3] + Libgpg_error_jll v1.36.0+0
[94ce4f54] + Libiconv_jll v1.16.0+0
[38a345b3] + Libuuid_jll v2.34.0+3
[093fc24a] + LightGraphs v1.3.0
[d3d80556] + LineSearches v7.0.1
[4345ca2d] + Loess v0.5.0
[856f044c] + MKL_jll v2019.0.117+0
[1914dd2f] + MacroTools v0.5.3
[739be429] + MbedTLS v0.7.0
[442fdcdd] + Measures v0.3.1
[e89f7d12] + Media v0.5.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.5.0
[2774e3e8] + NLsolve v4.2.0
[77ba4419] + NaNMath v0.3.3
[d2adbeaf] + Neo4j v2.0.0
[6fe1bfb0] + OffsetArrays v0.11.4
[4536629a] + OpenBLAS_jll v0.3.7+2
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.19.7
[bac558e1] + OrderedCollections v1.1.0
[2f80f16e] + PCRE_jll v8.42.0+1
[90014a1f] + PDMats v0.9.10
[36c8627f] + Pango_jll v1.42.4+7
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[30392449] + Pixman_jll v0.38.4+1
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[c84ed2f1] + Ratios v0.3.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.6.0
[91fb55c2] + RoME v0.5.3
[238d586b] + RoMEPlotting v0.1.8
[6038ab10] + Rotations v0.13.0
[992d4aef] + Showoff v0.3.1
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[9b8138ad] + TransformUtils v0.2.2
[efce3f68] + WoodburyMatrices v0.4.1
[546b0b6d] + X11_jll v1.6.8+4
[02c8fc9c] + XML2_jll v2.9.9+1
[aed1982a] + XSLT_jll v1.1.33+0
[84d6cd60] + Xorg_inputproto_jll v2.3.2+0
[060dd47b] + Xorg_kbproto_jll v1.0.7+0
[4f6342f7] + Xorg_libX11_jll v1.6.8+0
[0c0b7dd1] + Xorg_libXau_jll v1.0.9+0
[a3789734] + Xorg_libXdmcp_jll v1.1.3+0
[1082639a] + Xorg_libXext_jll v1.3.4+0
[ea2f1a96] + Xorg_libXrender_jll v0.9.10+0
[14d82f49] + Xorg_libpthread_stubs_jll v0.1.0+0
[c7cfdc94] + Xorg_libxcb_jll v1.13.0+0
[21e99dc2] + Xorg_renderproto_jll v0.11.1+0
[7c09cfe3] + Xorg_util_macros_jll v1.19.2+0
[c2e9c405] + Xorg_xcb_proto_jll v1.13.0+0
[d13bc2ba] + Xorg_xextproto_jll v7.3.0+0
[46797783] + Xorg_xproto_jll v7.0.31+0
[c5fb5394] + Xorg_xtrans_jll v1.4.0+0
[83775a58] + Zlib_jll v1.2.11+7
[b53b4c65] + libpng_jll v1.6.37+2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MbedTLS ───→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Updating `/tmp/jl_g4qDcZ/Project.toml`
[no changes]
Updating `/tmp/jl_g4qDcZ/Manifest.toml`
[no changes]
Building FFTW ──────→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_H6SO7p/Project.toml`
[no changes]
Updating `/tmp/jl_H6SO7p/Manifest.toml`
[no changes]
Building Fontconfig → `~/.julia/packages/Fontconfig/EPLI0/deps/build.log`
Updating `/tmp/jl_YioNcU/Project.toml`
[no changes]
Updating `/tmp/jl_YioNcU/Manifest.toml`
[no changes]
Building Rmath ─────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_TNyWrP/Project.toml`
[no changes]
Updating `/tmp/jl_TNyWrP/Manifest.toml`
[no changes]
Building CodecZlib ─→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_KJW9uZ/Project.toml`
[no changes]
Updating `/tmp/jl_KJW9uZ/Manifest.toml`
[no changes]
Testing RoMEPlotting
Updating `/tmp/jl_V5AkGz/Project.toml`
[no changes]
Updating `/tmp/jl_V5AkGz/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_V5AkGz/Project.toml`
[9bbbb610] ApproxManifoldProducts v0.1.2
[159f3aea] Cairo v1.0.2
[5ae59095] Colors v0.9.6
[a81c6b42] Compose v0.8.0
[b5cc3c7e] DistributedFactorGraphs v0.5.2
[ffbed154] DocStringExtensions v0.8.1
[186bb1d3] Fontconfig v0.3.0
[c91e804a] Gadfly v1.0.1
[86223c79] Graphs v0.10.3
[904591bb] IncrementalInference v0.8.3
[2472808a] KernelDensityEstimate v0.5.2
[c43967c8] KernelDensityEstimatePlotting v0.1.6
[189a3867] Reexport v0.2.0
[91fb55c2] RoME v0.5.3
[238d586b] RoMEPlotting v0.1.8
[2913bbd2] StatsBase v0.32.0
[ade2ca70] Dates
[37e2e46d] LinearAlgebra
[10745b16] Statistics
[8dfed614] Test
[ Info: Multithreaded convolutions possible, Threads.nthreads()=1. See `addFactor!(.;threadmodel=MultiThreaded)`.
[ Info: KernelDensityEstimate.FORCE_EVAL_DIRECT = true
WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T} where T<:DistributedFactorGraphs.InferenceVariable})(Array{Float64, 2}, Array{Float64, 2}, Array{Symbol, 1}, Array{Int64, 1}, Int64, Bool, Symbol, Array{Symbol, 1}, T<:DistributedFactorGraphs.InferenceVariable, Bool, Float64, Bool, Bool, Int64) where {T<:DistributedFactorGraphs.InferenceVariable} in module DistributedFactorGraphs at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:11 overwritten at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:41.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T} where T<:DistributedFactorGraphs.InferenceVariable})(Array{Float64, 2}, Array{Float64, 2}, Array{Symbol, 1}, Array{Int64, 1}, Int64, Bool, Symbol, Array{Symbol, 1}, T<:DistributedFactorGraphs.InferenceVariable, Bool, Float64, Bool, Bool, Int64) where {T<:DistributedFactorGraphs.InferenceVariable} in module DistributedFactorGraphs at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:11 overwritten at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:41.
** incremental compilation may be fatally broken for this module **
[ Info: KernelDensityEstimate.FORCE_EVAL_DIRECT = true
[ Info: Loading DataFrames support into Gadfly.jl
[ Info: Adding graph visualization tools.
[ Info: Defining spyCliqMat(..) for visualizing association matrix of a clique in the Bayes (Juntion) tree
WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T} where T<:DistributedFactorGraphs.InferenceVariable})(Array{Float64, 2}, Array{Float64, 2}, Array{Symbol, 1}, Array{Int64, 1}, Int64, Bool, Symbol, Array{Symbol, 1}, T<:DistributedFactorGraphs.InferenceVariable, Bool, Float64, Bool, Bool, Int64) where {T<:DistributedFactorGraphs.InferenceVariable} in module DistributedFactorGraphs at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:11 overwritten at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:41.
** incremental compilation may be fatally broken for this module **
WARNING: ignoring conflicting import of DistributedFactorGraphs.compare into RoME
WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T} where T<:DistributedFactorGraphs.InferenceVariable})(Array{Float64, 2}, Array{Float64, 2}, Array{Symbol, 1}, Array{Int64, 1}, Int64, Bool, Symbol, Array{Symbol, 1}, T<:DistributedFactorGraphs.InferenceVariable, Bool, Float64, Bool, Bool, Int64) where {T<:DistributedFactorGraphs.InferenceVariable} in module DistributedFactorGraphs at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:11 overwritten at /home/pkgeval/.julia/packages/DistributedFactorGraphs/G2Wc2/src/entities/DFGVariable.jl:41.
** incremental compilation may be fatally broken for this module **
WARNING: ignoring conflicting import of Graphs.plot into RoMEPlotting
┌ Warning: Parsing command "convert -delay $(delay) $(tmpfilepath)/$(string(lbll))mcmc*.png $(tmpfilepath)/$(string(lbll))mcmc.gif". Special characters "#{}()[]<>|&*?~;" should now be quoted in commands
│ caller = shell_parse(::String, ::Bool; special::String) at shell.jl:107
└ @ Base ./shell.jl:107
WARNING: Method definition getKDERange(Array{KernelDensityEstimate.BallTreeDensity, 1}) in module KernelDensityEstimate at /home/pkgeval/.julia/packages/KernelDensityEstimate/zJ4Va/src/DualTree01.jl:574 overwritten in module RoMEPlotting at /home/pkgeval/.julia/packages/RoMEPlotting/Ui2BD/src/RobotViz.jl:370.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getKDERange##kw(Any, typeof(KernelDensityEstimate.getKDERange), Array{KernelDensityEstimate.BallTreeDensity, 1}) in module KernelDensityEstimate at /home/pkgeval/.julia/packages/KernelDensityEstimate/zJ4Va/src/DualTree01.jl:574 overwritten in module RoMEPlotting at /home/pkgeval/.julia/packages/RoMEPlotting/Ui2BD/src/RobotViz.jl:370.
** incremental compilation may be fatally broken for this module **
[ Info: try doautoinit! of x0
[ Info: try doautoinit! of x0
[ Info: init with useinitfct [:x0f1]
[ Info: do init of x0
[ Info: try doautoinit! of x1
[ Info: Solving over the Bayes (Junction) tree.
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
Si = [:x0]
[ Info:
[ Info: Eliminating x0
[ Info: ===============
[ Info:
[ Info: - Removing x0
[ Info: Looking at x0f2
[ Info: - Breaking link x0f2->x0...
[ Info: - Original links: [:x0]
[ Info: - New links: Symbol[]
[ Info: x0f2 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x0 to tree...
[ Info: Adding x1 to tree...
Find potential functions for each clique
[ Info: Get potentials x0,x1,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
Bayes Tree
[ Info: Do tree based init-inference on tree
State machine iter=1
State machine iter=2
State machine iter=3
State machine iter=4
State machine iter=5
State machine iter=6
[ Info: up w 0 msgs
[ Info: ---------- successive fnc approx ------------x0,x1,:
[ Info: #1 --
[ Info: ---------- successive fnc approx ------------x0,x1,:
[ Info: #1 --
[ Info: [2x0p,d3,N100],
[ Info: #2 --
[ Info: [2x0p,d3,N100],
[ Info: #3 --
[ Info: [2x0p,d3,N100],
[ Info: fmcmc! -- solverData(vert=x1).inferdim=9.0
[ Info: fmcmc! -- solverData(vert=x0).inferdim=12.0
[ Info: Outgoing msg density on:
[ Info: prepCliqInitMsgsUp, seps=Symbol[]
State machine iter=7
State machine iter=8
[ Info: transferUpdateSubGraph! -- syms=[:x0, :x1]
[ Info: sym=x0, mem size of val=(3, 100) and (3, 100)
┌ Warning: Deprecated updateFullVertData!, need alternative
└ @ IncrementalInference ~/.julia/packages/IncrementalInference/8RIan/src/FactorGraphTypes.jl:362
[ Info: sym=x1, mem size of val=(3, 100) and (3, 100)
┌ Warning: Deprecated updateFullVertData!, need alternative
└ @ IncrementalInference ~/.julia/packages/IncrementalInference/8RIan/src/FactorGraphTypes.jl:362
State machine iter=9
[ Info: Finished tree based init-inference
[ Info: try doautoinit! of x2
[ Info: try doautoinit! of l1
[ Info: try doautoinit! of l1
[ Info: init with useinitfct [:l1f1, :x0l1f1]
[ Info: do init of l1
[ Info: [2x0p,d2,N100],
[ Info: Solving over the Bayes (Junction) tree.
[ Info: Building Bayes net...
[ Info:
[ Info: Eliminating x2
[ Info: ===============
[ Info:
[ Info: - Removing x2
Si = [:x1]
[ Info:
[ Info: Eliminating l1
[ Info: ===============
[ Info:
[ Info: - Removing l1
Si = [:x0]
[ Info:
[ Info: Eliminating x1
[ Info: ===============
[ Info:
[ Info: - Removing x1
[ Info: Looking at x1f1
[ Info: - Breaking link x1f1->x1...
[ Info: - Original links: [:x1]
[ Info: - New links: Symbol[]
[ Info: x1f1 doesn't have any other links, not adding it back...
Si = [:x0]
[ Info:
[ Info: Eliminating x0
[ Info: ===============
[ Info:
[ Info: - Removing x0
[ Info: Looking at x0f2
[ Info: - Breaking link x0f2->x0...
[ Info: - Original links: [:x0]
[ Info: - New links: Symbol[]
[ Info: x0f2 doesn't have any other links, not adding it back...
[ Info: Looking at x0f3
[ Info: - Breaking link x0f3->x0...
[ Info: - Original links: [:x0]
[ Info: - New links: Symbol[]
[ Info: x0f3 doesn't have any other links, not adding it back...
[ Info: Staring the Bayes tree construction from Bayes net
[ Info: Adding x0 to tree...
[ Info: Adding x1 to tree...
[ Info: Adding l1 to tree...
[ Info: Adding x2 to tree...
[ Info: Get potentials l1,: x0,
Find potential functions for each clique
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials x2,: x1,
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: Get potentials x0,x1,:
[ Info: using all factors connected to frontals and attached to separator
[ Info: finding all frontals for down WIP
[ Info: cliq=1 adding factor that is not in separator, l1
[ Info: cliq=1 adding factor that is not in separator, x2
Bayes Tree
[ Info: Do tree based init-inference on tree
State machine iter=1
State machine iter=2
State machine iter=3
State machine iter=4
State machine iter=1
State machine iter=2
State machine iter=3
State machine iter=4
State machine iter=5
State machine iter=6
State machine iter=7
State machine iter=8
State machine iter=1
State machine iter=2
[ Info: up w 0 msgs
[ Info: ---------- successive fnc approx ------------l1,: x0,
[ Info: #1 --
[ Info: ---------- successive fnc approx ------------l1,: x0,
[ Info: #1 --
State machine iter=3[ Info: [2x0p,d2,N100],
[ Info: #2 --
State machine iter=4[ Info: [2x0p,d2,N100],
[ Info: #3 --
State machine iter=5[ Info: [2x0p,d2,N100],
[ Info: fmcmc! -- solverData(vert=x0).inferdim=4.0
State machine iter=6[ Info: fmcmc! -- solverData(vert=l1).inferdim=8.0
[ Info: Outgoing msg density on:
State machine iter=7[ Info: prepCliqInitMsgsUp, seps=[:x0]
State machine iter=8
[ Info: up w 0 msgs
[ Info: ---------- successive fnc approx ------------x2,: x1,
[ Info: #1 --
[ Info: ---------- successive fnc approx ------------x2,: x1,
[ Info: #1 --
State machine iter=9[ Info: #2 --
[ Info: #3 --
[ Info: fmcmc! -- solverData(vert=x2).inferdim=9.0
State machine iter=10[ Info: fmcmc! -- solverData(vert=x1).inferdim=9.0
[ Info: Outgoing msg density on:
[ Info: prepCliqInitMsgsUp, seps=[:x1]
State machine iter=5
State machine iter=6
[ Info: up w 2 msgs
[ Info: inp.sendmsgs[x0].inferdim=4.0
[ Info: inp.sendmsgs[x1].inferdim=9.0
State machine iter=9
State machine iter=10[ Info: ---------- successive fnc approx ------------x0,x1,:
[ Info: #1 --
[ Info: ---------- successive fnc approx ------------x0,x1,:
[ Info: #1 --
[ Info: [2x0p,d3,N100],
[ Info: [3x0p,d3,N100],
[ Info: #2 --
[ Info: [2x0p,d3,N100],
[ Info: [3x0p,d3,N100],
[ Info: #3 --
[ Info: [2x0p,d3,N100],
[ Info: [3x0p,d3,N100],
[ Info: fmcmc! -- solverData(vert=x1).inferdim=18.0
[ Info: fmcmc! -- solverData(vert=x0).inferdim=16.0
[ Info: Outgoing msg density on:
[ Info: prepCliqInitMsgsUp, seps=Symbol[]
State machine iter=7
State machine iter=8
[ Info: transferUpdateSubGraph! -- syms=[:x0, :x1]
[ Info: sym=x0, mem size of val=(3, 100) and (3, 100)
┌ Warning: Deprecated updateFullVertData!, need alternative
└ @ IncrementalInference ~/.julia/packages/IncrementalInference/8RIan/src/FactorGraphTypes.jl:362
[ Info: sym=x1, mem size of val=(3, 100) and (3, 100)
┌ Warning: Deprecated updateFullVertData!, need alternative
└ @ IncrementalInference ~/.julia/packages/IncrementalInference/8RIan/src/FactorGraphTypes.jl:362
State machine iter=11
State machine iter=11
[ Info: [2x0p,d2,N100],
State machine iter=9
State machine iter=12
State machine iter=12
[ Info: Finished tree based init-inference
test Pose2D plotting
[ Info: drawPoses always sets orientation to max, regardless of meanmax setting. TODO modefit.
[ Info: drawPoses always sets orientation to max, regardless of meanmax setting. TODO modefit.
lb = :l1
Test Summary: |
Prepare a 2D factor graph with poses and points... | No tests
[ Info: try doautoinit! of x0
[ Info: try doautoinit! of x0
[ Info: init with useinitfct [:x0f1]
[ Info: do init of x0
[ Info: try doautoinit! of x1
[ Info: x1 is not initialized, and will do so now...
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x0x1f1]
[ Info: do init of x1
┌ Warning: evaluateDualTree vector evaluation API is changing for single point evaluation across multiple dimensions rather than assuming multiple points on a univariate kde.
└ @ KernelDensityEstimate ~/.julia/packages/KernelDensityEstimate/zJ4Va/src/DualTree01.jl:432
┌ Warning: evaluateDualTree vector evaluation API is changing for single point evaluation across multiple dimensions rather than assuming multiple points on a univariate kde.
└ @ KernelDensityEstimate ~/.julia/packages/KernelDensityEstimate/zJ4Va/src/DualTree01.jl:432
Test Summary: |
test plotKDE array (issue 65) | No tests
Testing RoMEPlotting tests passed