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1.6.0-DEV-bf8a8e8f9c.log
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Julia Version 1.6.0-DEV.654
Commit bf8a8e8f9c (2020-08-18 16:25 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed PDMats ─────────────────────── v0.10.0
Installed MultiScaleArrays ───────────── v1.8.1
Installed Parameters ─────────────────── v0.12.1
Installed LineSearches ───────────────── v7.0.1
Installed OrderedCollections ─────────── v1.3.0
Installed DocStringExtensions ────────── v0.8.2
Installed StochasticDiffEq ───────────── v6.25.0
Installed RandomNumbers ──────────────── v1.4.0
Installed MuladdMacro ────────────────── v0.2.2
Installed IteratorInterfaceExtensions ── v1.0.0
Installed PoissonRandom ──────────────── v0.4.0
Installed FastClosures ───────────────── v0.3.2
Installed LabelledArrays ─────────────── v1.3.0
Installed LeftChildRightSiblingTrees ─── v0.1.2
Installed OrdinaryDiffEq ─────────────── v5.42.3
Installed ZygoteRules ────────────────── v0.2.0
Installed NaNMath ────────────────────── v0.3.4
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DataAPI ────────────────────── v1.3.0
Installed FillArrays ─────────────────── v0.8.14
Installed Distributions ──────────────── v0.23.8
Installed Distances ──────────────────── v0.9.0
Installed ResettableStacks ───────────── v1.0.0
Installed ProgressLogging ────────────── v0.1.3
Installed TerminalLoggers ────────────── v0.1.2
Installed TreeViews ──────────────────── v0.3.0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Rmath ──────────────────────── v0.6.1
Installed SpecialFunctions ───────────── v0.10.3
Installed DiffResults ────────────────── v1.0.2
Installed FiniteDiff ─────────────────── v2.5.2
Installed LoopVectorization ──────────── v0.8.24
Installed ForwardDiff ────────────────── v0.10.12
Installed FunctionWrappers ───────────── v1.1.1
Installed DataStructures ─────────────── v0.17.20
Installed ProgressMeter ──────────────── v1.3.2
Installed StatsBase ──────────────────── v0.33.0
Installed SLEEFPirates ───────────────── v0.5.5
Installed GenericSVD ─────────────────── v0.3.0
Installed UnPack ─────────────────────── v1.0.2
Installed MacroTools ─────────────────── v0.5.5
Installed LoggingExtras ──────────────── v0.4.2
Installed RecipesBase ────────────────── v1.0.2
Installed VectorizationBase ──────────── v0.12.32
Installed TableTraits ────────────────── v1.0.0
Installed SortingAlgorithms ──────────── v0.3.1
Installed Compat ─────────────────────── v3.14.0
Installed NLsolve ────────────────────── v4.4.1
Installed ConsoleProgressMonitor ─────── v0.1.2
Installed Reexport ───────────────────── v0.2.0
Installed DiffRules ──────────────────── v1.0.1
Installed SparseDiffTools ────────────── v1.10.0
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed DiffEqNoiseProcess ─────────── v5.1.2
Installed ArnoldiMethod ──────────────── v0.0.4
Installed AbstractTrees ──────────────── v0.3.3
Installed VertexSafeGraphs ───────────── v0.1.2
Installed RecursiveArrayTools ────────── v2.6.0
Installed CpuId ──────────────────────── v0.2.2
Installed ExponentialUtilities ───────── v1.8.0
Installed DiffEqBase ─────────────────── v6.44.1
Installed QuadGK ─────────────────────── v2.4.0
Installed SimpleTraits ───────────────── v0.9.3
Installed Missings ───────────────────── v0.4.3
Installed NLSolversBase ──────────────── v7.7.0
Installed StatsFuns ──────────────────── v0.9.5
Installed SIMDPirates ────────────────── v0.8.24
Installed DiffEqJump ─────────────────── v6.9.5
Installed StaticArrays ───────────────── v0.12.4
Installed Requires ───────────────────── v1.0.1
Installed RecursiveFactorization ─────── v0.1.4
Installed LightGraphs ────────────────── v1.3.3
Installed Inflate ────────────────────── v0.1.2
Installed ArrayInterface ─────────────── v2.11.0
Installed Roots ──────────────────────── v1.0.5
Installed Adapt ──────────────────────── v2.0.2
Installed CommonSubexpressions ───────── v0.3.0
Installed OffsetArrays ───────────────── v1.1.2
Installed IterativeSolvers ───────────── v0.8.4
Installed ChainRulesCore ─────────────── v0.9.5
Updating `~/.julia/environments/v1.6/Project.toml`
[f9640e96] + MultiScaleArrays v1.8.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[1520ce14] + AbstractTrees v0.3.3
[79e6a3ab] + Adapt v2.0.2
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.11.0
[d360d2e6] + ChainRulesCore v0.9.5
[bbf7d656] + CommonSubexpressions v0.3.0
[34da2185] + Compat v3.14.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[88cd18e8] + ConsoleProgressMonitor v0.1.2
[adafc99b] + CpuId v0.2.2
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.17.20
[2b5f629d] + DiffEqBase v6.44.1
[c894b116] + DiffEqJump v6.9.5
[77a26b50] + DiffEqNoiseProcess v5.1.2
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.9.0
[31c24e10] + Distributions v0.23.8
[ffbed154] + DocStringExtensions v0.8.2
[d4d017d3] + ExponentialUtilities v1.8.0
[9aa1b823] + FastClosures v0.3.2
[1a297f60] + FillArrays v0.8.14
[6a86dc24] + FiniteDiff v2.5.2
[f6369f11] + ForwardDiff v0.10.12
[069b7b12] + FunctionWrappers v1.1.1
[01680d73] + GenericSVD v0.3.0
[d25df0c9] + Inflate v0.1.2
[42fd0dbc] + IterativeSolvers v0.8.4
[82899510] + IteratorInterfaceExtensions v1.0.0
[2ee39098] + LabelledArrays v1.3.0
[1d6d02ad] + LeftChildRightSiblingTrees v0.1.2
[093fc24a] + LightGraphs v1.3.3
[d3d80556] + LineSearches v7.0.1
[e6f89c97] + LoggingExtras v0.4.2
[bdcacae8] + LoopVectorization v0.8.24
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.2
[f9640e96] + MultiScaleArrays v1.8.1
[d41bc354] + NLSolversBase v7.7.0
[2774e3e8] + NLsolve v4.4.1
[77ba4419] + NaNMath v0.3.4
[6fe1bfb0] + OffsetArrays v1.1.2
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.0
[1dea7af3] + OrdinaryDiffEq v5.42.3
[90014a1f] + PDMats v0.10.0
[d96e819e] + Parameters v0.12.1
[e409e4f3] + PoissonRandom v0.4.0
[33c8b6b6] + ProgressLogging v0.1.3
[92933f4c] + ProgressMeter v1.3.2
[1fd47b50] + QuadGK v2.4.0
[e6cf234a] + RandomNumbers v1.4.0
[3cdcf5f2] + RecipesBase v1.0.2
[731186ca] + RecursiveArrayTools v2.6.0
[f2c3362d] + RecursiveFactorization v0.1.4
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[ae5879a3] + ResettableStacks v1.0.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[f2b01f46] + Roots v1.0.5
[21efa798] + SIMDPirates v0.8.24
[476501e8] + SLEEFPirates v0.5.5
[699a6c99] + SimpleTraits v0.9.3
[a2af1166] + SortingAlgorithms v0.3.1
[47a9eef4] + SparseDiffTools v1.10.0
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[789caeaf] + StochasticDiffEq v6.25.0
[3783bdb8] + TableTraits v1.0.0
[5d786b92] + TerminalLoggers v0.1.2
[a2a6695c] + TreeViews v0.3.0
[3a884ed6] + UnPack v1.0.2
[3d5dd08c] + VectorizationBase v0.12.32
[19fa3120] + VertexSafeGraphs v0.1.2
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building SLEEFPirates → `~/.julia/packages/SLEEFPirates/jGsib/deps/build.log`
Testing MultiScaleArrays
Status `/tmp/jl_5L2XE3/Project.toml`
[2b5f629d] DiffEqBase v6.44.1
[6a86dc24] FiniteDiff v2.5.2
[f6369f11] ForwardDiff v0.10.12
[f9640e96] MultiScaleArrays v1.8.1
[1dea7af3] OrdinaryDiffEq v5.42.3
[731186ca] RecursiveArrayTools v2.6.0
[1bc83da4] SafeTestsets v0.0.1
[47a9eef4] SparseDiffTools v1.10.0
[789caeaf] StochasticDiffEq v6.25.0
[a2a6695c] TreeViews v0.3.0
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_5L2XE3/Manifest.toml`
[1520ce14] AbstractTrees v0.3.3
[79e6a3ab] Adapt v2.0.2
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.11.0
[d360d2e6] ChainRulesCore v0.9.5
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.14.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[adafc99b] CpuId v0.2.2
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.17.20
[2b5f629d] DiffEqBase v6.44.1
[c894b116] DiffEqJump v6.9.5
[77a26b50] DiffEqNoiseProcess v5.1.2
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.9.0
[31c24e10] Distributions v0.23.8
[ffbed154] DocStringExtensions v0.8.2
[d4d017d3] ExponentialUtilities v1.8.0
[9aa1b823] FastClosures v0.3.2
[1a297f60] FillArrays v0.8.14
[6a86dc24] FiniteDiff v2.5.2
[f6369f11] ForwardDiff v0.10.12
[069b7b12] FunctionWrappers v1.1.1
[01680d73] GenericSVD v0.3.0
[d25df0c9] Inflate v0.1.2
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[2ee39098] LabelledArrays v1.3.0
[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[093fc24a] LightGraphs v1.3.3
[d3d80556] LineSearches v7.0.1
[e6f89c97] LoggingExtras v0.4.2
[bdcacae8] LoopVectorization v0.8.24
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.2
[f9640e96] MultiScaleArrays v1.8.1
[d41bc354] NLSolversBase v7.7.0
[2774e3e8] NLsolve v4.4.1
[77ba4419] NaNMath v0.3.4
[6fe1bfb0] OffsetArrays v1.1.2
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.0
[1dea7af3] OrdinaryDiffEq v5.42.3
[90014a1f] PDMats v0.10.0
[d96e819e] Parameters v0.12.1
[e409e4f3] PoissonRandom v0.4.0
[33c8b6b6] ProgressLogging v0.1.3
[92933f4c] ProgressMeter v1.3.2
[1fd47b50] QuadGK v2.4.0
[e6cf234a] RandomNumbers v1.4.0
[3cdcf5f2] RecipesBase v1.0.2
[731186ca] RecursiveArrayTools v2.6.0
[f2c3362d] RecursiveFactorization v0.1.4
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[ae5879a3] ResettableStacks v1.0.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[f2b01f46] Roots v1.0.5
[21efa798] SIMDPirates v0.8.24
[476501e8] SLEEFPirates v0.5.5
[1bc83da4] SafeTestsets v0.0.1
[699a6c99] SimpleTraits v0.9.3
[a2af1166] SortingAlgorithms v0.3.1
[47a9eef4] SparseDiffTools v1.10.0
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[789caeaf] StochasticDiffEq v6.25.0
[3783bdb8] TableTraits v1.0.0
[5d786b92] TerminalLoggers v0.1.2
[a2a6695c] TreeViews v0.3.0
[3a884ed6] UnPack v1.0.2
[3d5dd08c] VectorizationBase v0.12.32
[19fa3120] VertexSafeGraphs v0.1.2
[700de1a5] ZygoteRules v0.2.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
ODE with tuple nodes
Test Summary: | Pass Broken Total
Tuple Nodes | 20 2 22
69.205910 seconds (52.58 M allocations: 2.772 GiB, 4.69% gc time)
Test Summary: | Pass Total
Bisect Search Tests | 33 33
0.088395 seconds (41.98 k allocations: 2.628 MiB)
+|Tissue; sue|Tis; sue|Tis
+|Popula; |Popula; +|Popula; |Popula; +|Popula; |Popula
+Cell; Cell; +Cell; Cell; +Cell; Cell; +Cell; Cell; +Cell; Cell; +Cell; Cell
+|Ti; |Ti; |Ti
+|Po; |Po; +|Po; |Po; +|Po; |Po
+Ce; Ce; +Ce; Ce; +Ce; Ce; +Ce; Ce; +Ce; Ce; +Ce; Ce
+|Ti; |Ti; |Ti
+|Po; |Po; +|Po; |Po; +|Po; |Po
+va: [1.0, 2.0, 3.0]; va: [4.0, 5.0]; +va: [3.0, 2.0, 5.0]; va: [4.0, 6.0]; +va: [3.0, 2.0, 5.0]; va: [4.0, 6.0]; +va: [1.0, 2.0, 3.0]; va: [4.0, 5.0]; +va: [1.0, 2.0, 3.0]; va: [4.0, 5.0]; +va: [3.0, 2.0, 5.0]; va: [4.0, 6.0]
+values: [1.0, 2.0, 3.0]; values: [4.0, 5.0]
38.564301 seconds (24.80 M allocations: 1.286 GiB, 1.85% gc time)
9.494026 seconds (9.81 M allocations: 551.201 MiB, 5.43% gc time)
92.354307 seconds (77.52 M allocations: 6.673 GiB, 5.21% gc time)
26.653833 seconds (28.93 M allocations: 4.303 GiB, 7.29% gc time)
0.073068 seconds (17.65 k allocations: 978.843 KiB)
0.013387 seconds (4.08 k allocations: 223.764 KiB)
0.000009 seconds (1 allocation: 16 bytes)
0.000011 seconds (1 allocation: 16 bytes)
Test Summary: | Pass Total
Indexing and Creation Tests | 133 133
177.962897 seconds (148.75 M allocations: 13.246 GiB, 4.64% gc time)
Test Summary: | Pass Total
Values Indexing | 55 55
0.133109 seconds (13.47 k allocations: 846.062 KiB)
Test Summary: | Pass Total
Get Indices Tests | 19 19
0.201442 seconds (67.80 k allocations: 3.829 MiB)
Test Summary: |
Additional Fields Test | No tests
58.209330 seconds (39.01 M allocations: 2.049 GiB, 3.31% gc time)
Do the ODE Part
Do the SDE Part
SRIW1 = SRIW1
SRA1 = SRA1
RKMil = RKMil
EM = EM
SRIW1 = SRIW1
SRA1 = SRA1
RKMil = RKMil
EM = EM
Test Summary: | Pass Total
Dynamic DiffEq Tests | 4 4
504.844972 seconds (307.22 M allocations: 27.827 GiB, 3.82% gc time)
Do the SDE Part
Test Summary: | Pass Total
Single Layer DiffEq Tests | 4 4
228.141503 seconds (142.32 M allocations: 10.166 GiB, 4.02% gc time)
Test Summary: | Pass Total
New Nodes Tests | 1 1
7.871095 seconds (5.43 M allocations: 362.987 MiB, 4.77% gc time)
Testing MultiScaleArrays tests passed