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1.5.0-DEV-fbc2c0aec1.log
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Julia Version 1.5.0-DEV.221
Commit fbc2c0aec1 (2020-02-01 18:55 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed Rmath ─────────────────────── v0.6.0
Installed Distances ─────────────────── v0.8.2
Installed Parsers ───────────────────── v0.3.11
Installed EBayes ────────────────────── v0.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed ColorTypes ────────────────── v0.8.1
Installed LineSearches ──────────────── v7.0.1
Installed Arpack_jll ────────────────── v3.5.0+2
Installed FillArrays ────────────────── v0.8.4
Installed NaNMath ───────────────────── v0.3.3
Installed TableTraits ───────────────── v1.0.0
Installed MappedArrays ──────────────── v0.2.2
Installed DiffEqDiffTools ───────────── v1.7.0
Installed FixedPointNumbers ─────────── v0.7.1
Installed DocStringExtensions ───────── v0.8.1
Installed CategoricalArrays ─────────── v0.7.7
Installed DataAPI ───────────────────── v1.1.0
Installed LearnBase ─────────────────── v0.2.2
Installed Requires ──────────────────── v0.5.2
Installed Arpack ────────────────────── v0.4.0
Installed QuadGK ────────────────────── v2.3.1
Installed MLLabelUtils ──────────────── v0.5.1
Installed StatsBase ─────────────────── v0.32.0
Installed StatsFuns ─────────────────── v0.9.3
Installed StructArrays ──────────────── v0.4.1
Installed NLSolversBase ─────────────── v7.6.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed BinaryProvider ────────────── v0.5.8
Installed WeakRefStrings ────────────── v0.6.2
Installed Optim ─────────────────────── v0.19.7
Installed ScientificTypes ───────────── v0.2.7
Installed Missings ──────────────────── v0.4.3
Installed OpenBLAS_jll ──────────────── v0.3.7+5
Installed Crayons ───────────────────── v4.0.1
Installed Tables ────────────────────── v0.2.11
Installed ProgressMeter ─────────────── v1.2.0
Installed LossFunctions ─────────────── v0.5.1
Installed Parameters ────────────────── v0.12.0
Installed Calculus ──────────────────── v0.5.1
Installed RecipesBase ───────────────── v0.7.0
Installed Compat ────────────────────── v3.2.0
Installed OrderedCollections ────────── v1.1.0
Installed CommonSubexpressions ──────── v0.2.0
Installed DataStructures ────────────── v0.17.9
Installed MLJModels ─────────────────── v0.5.6
Installed JSON ──────────────────────── v0.21.0
Installed MLJ ───────────────────────── v0.5.3
Installed DiffResults ───────────────── v1.0.2
Installed Reexport ──────────────────── v0.2.0
Installed PDMats ────────────────────── v0.9.11
Installed ArrayInterface ────────────── v2.3.1
Installed SpecialFunctions ──────────── v0.9.0
Installed PositiveFactorizations ────── v0.2.3
Installed StaticArrays ──────────────── v0.12.1
Installed MLDataPattern ─────────────── v0.5.0
Installed ComputationalResources ────── v0.3.0
Installed DataValueInterfaces ───────── v1.0.0
Installed FiniteDiff ────────────────── v2.1.0
Installed ForwardDiff ───────────────── v0.10.9
Installed PrettyTables ──────────────── v0.6.0
Installed PooledArrays ──────────────── v0.5.3
Installed DiffRules ─────────────────── v1.0.0
Installed Formatting ────────────────── v0.4.1
Installed MLJBase ───────────────────── v0.7.5
Installed Distributions ─────────────── v0.21.12
#=#=# ######################################################################## 100.0%
#=#=# ##O#- # ######################################################################## 100.0%
#=#=# ## 3.4%####### 10.0%############## 19.7%####################### 33.1%################################### 48.7%################################################# 68.7%###################################################################### 98.6%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
[bad9efff] + EBayes v0.1.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.7
[3da002f7] + ColorTypes v0.8.1
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v3.2.0
[ed09eef8] + ComputationalResources v0.3.0
[a8cc5b0e] + Crayons v4.0.1
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.7.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.12
[ffbed154] + DocStringExtensions v0.8.1
[bad9efff] + EBayes v0.1.0
[1a297f60] + FillArrays v0.8.4
[6a86dc24] + FiniteDiff v2.1.0
[53c48c17] + FixedPointNumbers v0.7.1
[59287772] + Formatting v0.4.1
[f6369f11] + ForwardDiff v0.10.9
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[7f8f8fb0] + LearnBase v0.2.2
[d3d80556] + LineSearches v7.0.1
[30fc2ffe] + LossFunctions v0.5.1
[9920b226] + MLDataPattern v0.5.0
[add582a8] + MLJ v0.5.3
[a7f614a8] + MLJBase v0.7.5
[d491faf4] + MLJModels v0.5.6
[66a33bbf] + MLLabelUtils v0.5.1
[dbb5928d] + MappedArrays v0.2.2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.6.1
[77ba4419] + NaNMath v0.3.3
[4536629a] + OpenBLAS_jll v0.3.7+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.19.7
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.11
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[08abe8d2] + PrettyTables v0.6.0
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.6.0
[321657f4] + ScientificTypes v0.2.7
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[09ab397b] + StructArrays v0.4.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Testing EBayes
Status `/tmp/jl_GNqvAh/Manifest.toml`
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+2
[4fba245c] ArrayInterface v2.3.1
[b99e7846] BinaryProvider v0.5.8
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.7
[3da002f7] ColorTypes v0.8.1
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v3.2.0
[ed09eef8] ComputationalResources v0.3.0
[a8cc5b0e] Crayons v4.0.1
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.9
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.7.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.12
[ffbed154] DocStringExtensions v0.8.1
[bad9efff] EBayes v0.1.0
[1a297f60] FillArrays v0.8.4
[6a86dc24] FiniteDiff v2.1.0
[53c48c17] FixedPointNumbers v0.7.1
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.9
[38e38edf] GLM v1.3.6
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[7f8f8fb0] LearnBase v0.2.2
[d3d80556] LineSearches v7.0.1
[30fc2ffe] LossFunctions v0.5.1
[9920b226] MLDataPattern v0.5.0
[add582a8] MLJ v0.5.3
[a7f614a8] MLJBase v0.7.5
[d491faf4] MLJModels v0.5.6
[66a33bbf] MLLabelUtils v0.5.1
[dbb5928d] MappedArrays v0.2.2
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.6.1
[77ba4419] NaNMath v0.3.3
[4536629a] OpenBLAS_jll v0.3.7+5
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[429524aa] Optim v0.19.7
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.11
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.11
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[08abe8d2] PrettyTables v0.6.0
[92933f4c] ProgressMeter v1.2.0
[1fd47b50] QuadGK v2.3.1
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[79098fc4] Rmath v0.6.0
[321657f4] ScientificTypes v0.2.7
[1277b4bf] ShiftedArrays v1.0.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.3
[3eaba693] StatsModels v0.6.7
[09ab397b] StructArrays v0.4.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[ea10d353] WeakRefStrings v0.6.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
ERROR: LoadError: LoadError: UndefVarError: @get! not defined
Stacktrace:
[1] include(::Module, ::String) at ./Base.jl:377
[2] include(::String) at /home/pkgeval/.julia/packages/Requires/9Jse8/src/Requires.jl:3
[3] top-level scope at /home/pkgeval/.julia/packages/Requires/9Jse8/src/Requires.jl:6
[4] include(::Module, ::String) at ./Base.jl:377
[5] top-level scope at none:2
[6] eval at ./boot.jl:331 [inlined]
[7] eval(::Expr) at ./client.jl:449
[8] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Requires/9Jse8/src/require.jl:1
in expression starting at /home/pkgeval/.julia/packages/Requires/9Jse8/src/Requires.jl:6
ERROR: LoadError: Failed to precompile Requires [ae029012-a4dd-5104-9daa-d747884805df] to /home/pkgeval/.julia/compiled/v1.5/Requires/IyxeS_IBYEU.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/MLJModels/5Qzge/src/MLJModels.jl:4
ERROR: LoadError: Failed to precompile MLJModels [d491faf4-2d78-11e9-2867-c94bc002c0b7] to /home/pkgeval/.julia/compiled/v1.5/MLJModels/0nkqq_IBYEU.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/MLJ/O4DUw/src/MLJ.jl:67
ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to /home/pkgeval/.julia/compiled/v1.5/MLJ/rAU56_IBYEU.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/EBayes/TdGvO/src/EBayes.jl:32
ERROR: LoadError: LoadError: Failed to precompile EBayes [bad9efff-1a8e-41fb-9e7d-5d6f530fb0a3] to /home/pkgeval/.julia/compiled/v1.5/EBayes/AL9IL_IBYEU.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:439
[7] top-level scope at /home/pkgeval/.julia/packages/EBayes/TdGvO/test/runtests.jl:1
[8] include(::String) at ./client.jl:439
[9] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/EBayes/TdGvO/test/tests_ebayes_samples.jl:2
in expression starting at /home/pkgeval/.julia/packages/EBayes/TdGvO/test/runtests.jl:1
ERROR: Package EBayes errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13