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1.5.0-DEV-fbc2c0aec1.log
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Julia Version 1.5.0-DEV.221
Commit fbc2c0aec1 (2020-02-01 18:55 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Missings ─────────── v0.4.3
Installed SortingAlgorithms ── v0.3.1
Installed KernelMethods ────── v0.1.3
Installed Parsers ──────────── v0.3.11
Installed OrderedCollections ─ v1.1.0
Installed DataStructures ───── v0.17.9
Installed StatsBase ────────── v0.32.0
Installed JSON ─────────────── v0.21.0
Installed DataAPI ──────────── v1.1.0
Installed SimilaritySearch ─── v0.3.17
Updating `~/.julia/environments/v1.5/Project.toml`
[d79e8f30] + KernelMethods v0.1.3
Updating `~/.julia/environments/v1.5/Manifest.toml`
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[682c06a0] + JSON v0.21.0
[d79e8f30] + KernelMethods v0.1.3
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.11
[053f045d] + SimilaritySearch v0.3.17
[a2af1166] + SortingAlgorithms v0.3.1
[2913bbd2] + StatsBase v0.32.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[de0858da] + Printf
[9a3f8284] + Random
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[4ec0a83e] + Unicode
Testing KernelMethods
Status `/tmp/jl_5bGHB3/Manifest.toml`
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.9
[682c06a0] JSON v0.21.0
[d79e8f30] KernelMethods v0.1.3
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.11
[053f045d] SimilaritySearch v0.3.17
[a2af1166] SortingAlgorithms v0.3.1
[2913bbd2] StatsBase v0.32.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[de0858da] Printf
[9a3f8284] Random
[9e88b42a] Serialization
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[4ec0a83e] Unicode
Test Summary: | Pass Total
Scores | 9 9
Test Summary: | Pass Total
CrossValidation | 82 82
computing fartest point 1, dmax: Inf, imax: 32, stop: #3
computing fartest point 2, dmax: 1.2487312628163922, imax: 42, stop: #3
computing fartest point 3, dmax: 1.0056644717734216, imax: 16, stop: #3
computing fartest point 4, dmax: 0.9003868509086335, imax: 43, stop: #3
computing fartest point 5, dmax: 0.647979230208973, imax: 25, stop: #3
computing fartest point 6, dmax: 0.550123308336836, imax: 33, stop: #3
computing fartest point 7, dmax: 0.5079672903642404, imax: 2, stop: #3
computing fartest point 8, dmax: 0.45218744012670875, imax: 15, stop: #3
computing fartest point 9, dmax: 0.4521874401267083, imax: 19, stop: #3
computing fartest point 10, dmax: 0.4512427328645861, imax: 23, stop: #3
computing fartest point 11, dmax: 0.4512427328645861, imax: 45, stop: #3
computing fartest point 12, dmax: 0.42414336984337275, imax: 5, stop: #3
computing fartest point 13, dmax: 0.38557134423932293, imax: 44, stop: #3
computing fartest point 14, dmax: 0.35770802956535763, imax: 17, stop: #3
computing fartest point 15, dmax: 0.3047559503871529, imax: 6, stop: #3
computing fartest point 16, dmax: 0.3023994796109174, imax: 9, stop: #3
computing fartest point 17, dmax: 0.30000000000000027, imax: 50, stop: #3
computing fartest point 18, dmax: 0.2818334139910908, imax: 34, stop: #3
computing fartest point 19, dmax: 0.2818334139910906, imax: 49, stop: #3
computing fartest point 20, dmax: 0.27900513350063566, imax: 30, stop: #3
computing fartest point 21, dmax: 0.25408413705439825, imax: 14, stop: #3
==> Iris-setosa: 1.0
computing fartest point 1, dmax: Inf, imax: 28, stop: #3
computing fartest point 2, dmax: 2.2651055792133503, imax: 49, stop: #3
computing fartest point 3, dmax: 1.3173768670040815, imax: 35, stop: #3
computing fartest point 4, dmax: 0.9577482391690149, imax: 13, stop: #3
computing fartest point 5, dmax: 0.7435560561011976, imax: 25, stop: #3
computing fartest point 6, dmax: 0.7214016292250338, imax: 15, stop: #3
computing fartest point 7, dmax: 0.7133446568188243, imax: 34, stop: #3
computing fartest point 8, dmax: 0.6213726406429249, imax: 19, stop: #3
computing fartest point 9, dmax: 0.6177876922766915, imax: 11, stop: #3
computing fartest point 10, dmax: 0.5885567080436336, imax: 36, stop: #3
computing fartest point 11, dmax: 0.5277581375553864, imax: 32, stop: #3
computing fartest point 12, dmax: 0.47588204363484865, imax: 18, stop: #3
computing fartest point 13, dmax: 0.452187440126708, imax: 10, stop: #3
computing fartest point 14, dmax: 0.44366440986799094, imax: 24, stop: #3
computing fartest point 15, dmax: 0.4436644098679903, imax: 12, stop: #3
computing fartest point 16, dmax: 0.4292763936246034, imax: 1, stop: #3
computing fartest point 17, dmax: 0.3855713442393235, imax: 41, stop: #3
computing fartest point 18, dmax: 0.37160686372008095, imax: 4, stop: #3
computing fartest point 19, dmax: 0.342699045680346, imax: 27, stop: #3
computing fartest point 20, dmax: 0.34269904568034565, imax: 21, stop: #3
computing fartest point 21, dmax: 0.3426990456803456, imax: 23, stop: #3
==> Iris-versicolor: 0.9466666666666667
computing fartest point 1, dmax: Inf, imax: 2, stop: #3
computing fartest point 2, dmax: 2.286545562761162, imax: 19, stop: #3
computing fartest point 3, dmax: 1.2243859686204253, imax: 32, stop: #3
computing fartest point 4, dmax: 1.1593598500987488, imax: 44, stop: #3
computing fartest point 5, dmax: 0.9690659843132579, imax: 7, stop: #3
computing fartest point 6, dmax: 0.8209138118267935, imax: 36, stop: #3
computing fartest point 7, dmax: 0.8005070987420991, imax: 42, stop: #3
computing fartest point 8, dmax: 0.7636512623737696, imax: 9, stop: #3
computing fartest point 9, dmax: 0.6884853143712274, imax: 49, stop: #3
computing fartest point 10, dmax: 0.63408823161226, imax: 35, stop: #3
computing fartest point 11, dmax: 0.6213726406429249, imax: 30, stop: #3
computing fartest point 12, dmax: 0.5690409442606839, imax: 20, stop: #3
computing fartest point 13, dmax: 0.5335302347011457, imax: 12, stop: #3
computing fartest point 14, dmax: 0.5086873293858954, imax: 1, stop: #3
computing fartest point 15, dmax: 0.5086873293858954, imax: 8, stop: #3
computing fartest point 16, dmax: 0.5081682741087964, imax: 10, stop: #3
computing fartest point 17, dmax: 0.5007466368307506, imax: 15, stop: #3
computing fartest point 18, dmax: 0.4436644098679906, imax: 27, stop: #3
computing fartest point 19, dmax: 0.4292763936246036, imax: 11, stop: #3
computing fartest point 20, dmax: 0.41963031030409564, imax: 6, stop: #3
computing fartest point 21, dmax: 0.4142159340231804, imax: 13, stop: #3
==> Iris-virginica: 0.9533333333333334
===> macro-recall: 0.9666666666666668
Test Summary: | Pass Total
encode by farthest points | 1 1
optimize!(nnc, accuracy, folds = 5) = [(0.9733333333333334, (7, :uniform)), (0.9733333333333334, (7, :distance)), (0.9666666666666668, (3, :uniform)), (0.9666666666666668, (3, :distance)), (0.9600000000000002, (1, :uniform)), (0.9600000000000002, (1, :distance))]
Test Summary: | Pass Total
KNN | 9 9
[ Info: optimizing nbc NaiveBayesClassifier{Array{Float64,1},String}
[ Info: optimizing nbc NaiveBayesClassifier{Array{Float64,1},String}
[ Info: optimizing nbc NaiveBayesClassifier{Array{Float64,1},String}
[ Info: optimizing nbc NaiveBayesClassifier{Array{Float64,1},String}
[ Info: optimizing nbc NaiveBayesClassifier{Array{Float64,1},String}
optimize!(nbc, X, y, accuracy, runs = 5, trainratio = 0.7, testratio = 0.3) = Tuple{Float64,Tuple{DataType,Real}}[(0.9155555555555557, (KernelMethods.Supervised.GaussianKernel, -1)), (0.3422222222222222, (KernelMethods.Supervised.MultinomialKernel, 0.0)), (0.3422222222222222, (KernelMethods.Supervised.MultinomialKernel, 0.1)), (0.3422222222222222, (KernelMethods.Supervised.MultinomialKernel, 0.3)), (0.3422222222222222, (KernelMethods.Supervised.MultinomialKernel, 1.0))]
Test Summary: | Pass Total
NB | 4 4
optimize!(nnr, isqerror, folds = 5) = Tuple{Float64,Tuple{Int64,Function}}[(-17.383272837983654, (3, KernelMethods.Supervised.hmean)), (-17.416942270382552, (3, KernelMethods.Supervised.gmean)), (-17.552145564438074, (3, Statistics.mean)), (-26.83790618618125, (1, KernelMethods.Supervised.hmean)), (-26.837906186181254, (1, KernelMethods.Supervised.gmean)), (-26.837906186181254, (1, Statistics.median)), (-26.837906186181254, (1, Statistics.mean)), (-32.69270834117483, (3, Statistics.median)), (-33.05607701571061, (7, KernelMethods.Supervised.hmean)), (-33.31498573311775, (7, KernelMethods.Supervised.gmean)), (-35.68892342304845, (7, Statistics.mean)), (-62.68451258718868, (7, Statistics.median))]
Test Summary: | Pass Total
KNN Regression | 2 2
computing fartest point 1, dmax: Inf, imax: 32, stop: #5
computing fartest point 2, dmax: 6.220932405998316, imax: 119, stop: #5
computing fartest point 3, dmax: 3.427827300200522, imax: 107, stop: #5
computing fartest point 4, dmax: 2.24276614920058, imax: 51, stop: #5
computing fartest point 5, dmax: 1.8165902124584954, imax: 101, stop: #5
computing fartest point 6, dmax: 1.6278820596099706, imax: 99, stop: #5
computing fartest point 7, dmax: 1.4387494569938162, imax: 42, stop: #5
computing fartest point 8, dmax: 1.3820274961085255, imax: 63, stop: #5
computing fartest point 9, dmax: 1.3784048752090223, imax: 135, stop: #5
computing fartest point 10, dmax: 1.349073756323204, imax: 132, stop: #5
computing fartest point 11, dmax: 1.1532562594670794, imax: 130, stop: #5
computing fartest point 12, dmax: 1.1489125293076061, imax: 115, stop: #5
optimize!(nnc, accuracy, folds = 5) = [(0.9666666666666668, (1, :uniform)), (0.9666666666666668, (1, :distance)), (0.9666666666666668, (3, :uniform)), (0.9666666666666668, (3, :distance)), (0.9666666666666668, (7, :uniform)), (0.9666666666666668, (7, :distance))]
Test Summary: | Pass Total
encode by farthest points | 4 4
computing fartest point 1, dmax: Inf, imax: 32, stop: #5
computing fartest point 2, dmax: 6.220932405998316, imax: 119, stop: #5
computing fartest point 3, dmax: 3.427827300200522, imax: 107, stop: #5
computing fartest point 4, dmax: 2.24276614920058, imax: 51, stop: #5
computing fartest point 5, dmax: 1.8165902124584954, imax: 101, stop: #5
computing fartest point 6, dmax: 1.6278820596099706, imax: 99, stop: #5
computing fartest point 7, dmax: 1.4387494569938162, imax: 42, stop: #5
computing fartest point 8, dmax: 1.3820274961085255, imax: 63, stop: #5
computing fartest point 9, dmax: 1.3784048752090223, imax: 135, stop: #5
computing fartest point 10, dmax: 1.349073756323204, imax: 132, stop: #5
computing fartest point 11, dmax: 1.1532562594670794, imax: 130, stop: #5
computing fartest point 12, dmax: 1.1489125293076061, imax: 115, stop: #5
optimize!(nnc, accuracy, folds = 10) = [(0.9733333333333334, (7, :uniform)), (0.9733333333333334, (7, :distance)), (0.9600000000000002, (3, :uniform)), (0.9600000000000002, (3, :distance)), (0.9466666666666667, (1, :uniform)), (0.9466666666666667, (1, :distance))]
Test Summary: | Pass Total
Clustering and centroid computation (with cosine) | 2 2
[ Info: computing dnet point 1, dmax: 0.4690415859222412
[ Info: computing dnet point 2, dmax: 0.6244997978210449
[ Info: computing dnet point 3, dmax: 0.8999999761581421
[ Info: computing dnet point 4, dmax: 1.3038405179977417
[ Info: computing dnet point 5, dmax: 0.5567764639854431
[ Info: computing dnet point 6, dmax: 0.5196152329444885
[ Info: computing dnet point 7, dmax: 1.228820562362671
[ Info: computing dnet point 8, dmax: 1.2247449159622192
[ Info: computing dnet point 9, dmax: 5.636488437652588
[ Info: computing dnet point 10, dmax: 4.3046488761901855
optimize!(nnc, accuracy, folds = 5) = [(0.9600000000000002, (3, :uniform)), (0.9600000000000002, (3, :distance)), (0.9533333333333335, (7, :uniform)), (0.9533333333333335, (7, :distance)), (0.9400000000000001, (1, :uniform)), (0.9400000000000001, (1, :distance))]
computing fartest point 1, dmax: Inf, imax: 94, stop: #3
computing fartest point 2, dmax: 0.4437843087216177, imax: 23, stop: #3
computing fartest point 3, dmax: 0.20565175062185237, imax: 42, stop: #3
computing fartest point 4, dmax: 0.19488268358476168, imax: 101, stop: #3
computing fartest point 5, dmax: 0.15012347257443073, imax: 25, stop: #3
computing fartest point 6, dmax: 0.1321716195383028, imax: 120, stop: #3
computing fartest point 7, dmax: 0.10625453629321123, imax: 142, stop: #3
computing fartest point 8, dmax: 0.09951235136933405, imax: 37, stop: #3
computing fartest point 9, dmax: 0.09315442149984295, imax: 85, stop: #3
computing fartest point 10, dmax: 0.08401095109349957, imax: 44, stop: #3
computing fartest point 11, dmax: 0.07897110094560329, imax: 88, stop: #3
computing fartest point 12, dmax: 0.07176131327695408, imax: 26, stop: #3
computing fartest point 13, dmax: 0.07056943360788868, imax: 74, stop: #3
computing fartest point 14, dmax: 0.06989819424678659, imax: 47, stop: #3
computing fartest point 15, dmax: 0.06615202903683252, imax: 129, stop: #3
computing fartest point 16, dmax: 0.061570023027851334, imax: 89, stop: #3
computing fartest point 17, dmax: 0.059441812481648384, imax: 99, stop: #3
computing fartest point 18, dmax: 0.05854888255309021, imax: 135, stop: #3
computing fartest point 19, dmax: 0.05430970904813861, imax: 116, stop: #3
computing fartest point 20, dmax: 0.05317363738853033, imax: 126, stop: #3
computing fartest point 21, dmax: 0.05295206882936809, imax: 119, stop: #3
[ Info: ===== accuracy by fftclustering: 0.98
Test Summary: | Pass Total
encode with dnet | 5 5
[ Info: testing configuration KernelMethods.KMap.KConfiguration(true, SimilaritySearch.cosine_distance, SimilaritySearch.cosine_distance, KernelMethods.Kernels.gaussian_kernel, (method = KernelMethods.KMap.dnet, kfun = KernelMethods.KMap.var"#24#31"()), :centroids, NearNeighborClassifier), data-type Array{Array{Float64,1},1}
[ Info: computing dnet point 1, dmax: -78.04000091552734
[ Info: computing dnet point 2, dmax: -40.900001525878906
[ Info: computing dnet point 3, dmax: Inf
[ Info: computing kmap, conf: KernelMethods.KMap.KConfiguration(true, SimilaritySearch.cosine_distance, SimilaritySearch.cosine_distance, KernelMethods.Kernels.gaussian_kernel, (method = KernelMethods.KMap.dnet, kfun = KernelMethods.KMap.var"#24#31"()), :centroids, NearNeighborClassifier)
encode by farthest points: Error During Test at /home/pkgeval/.julia/packages/KernelMethods/Eepvn/test/kclass.jl:19
Got exception outside of a @test
UndefVarError: normalize! not defined
Stacktrace:
[1] KernelClassifier(::Array{Array{Float64,1},1}, ::Array{String,1}; folds::Int64, score::Function, size::Int64, ensemble_size::Int64, space::KConfigurationSpace) at /home/pkgeval/.julia/packages/KernelMethods/Eepvn/src/kmap/kclass.jl:170
[2] top-level scope at /home/pkgeval/.julia/packages/KernelMethods/Eepvn/test/kclass.jl:23
[3] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[4] top-level scope at /home/pkgeval/.julia/packages/KernelMethods/Eepvn/test/kclass.jl:20
[5] include(::String) at ./client.jl:439
[6] top-level scope at /home/pkgeval/.julia/packages/KernelMethods/Eepvn/test/runtests.jl:82
[7] include(::String) at ./client.jl:439
[8] top-level scope at none:6
[9] eval(::Module, ::Any) at ./boot.jl:331
[10] exec_options(::Base.JLOptions) at ./client.jl:264
[11] _start() at ./client.jl:484
Test Summary: | Error Total
encode by farthest points | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/KernelMethods/Eepvn/test/kclass.jl:19
in expression starting at /home/pkgeval/.julia/packages/KernelMethods/Eepvn/test/runtests.jl:82
ERROR: Package KernelMethods errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13