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1.5.0-DEV-fbc2c0aec1.log
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1.5.0-DEV-fbc2c0aec1.log
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Julia Version 1.5.0-DEV.221
Commit fbc2c0aec1 (2020-02-01 18:55 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed AxisAlgorithms ────────────── v1.0.0
Installed KernelDensity ─────────────── v0.5.1
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed Rmath ─────────────────────── v0.6.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Recombinase ───────────────── v0.1.0
Installed FFTW ──────────────────────── v1.2.0
Installed Distances ─────────────────── v0.8.2
Installed ColorTypes ────────────────── v0.9.1
Installed LineSearches ──────────────── v7.0.1
Installed Interpolations ────────────── v0.12.8
Installed Arpack_jll ────────────────── v3.5.0+2
Installed FillArrays ────────────────── v0.8.4
Installed OffsetArrays ──────────────── v1.0.2
Installed NaNMath ───────────────────── v0.3.3
Installed IndexedTables ─────────────── v0.12.4
Installed TableTraits ───────────────── v1.0.0
Installed FixedPointNumbers ─────────── v0.7.1
Installed TableTraitsUtils ──────────── v1.0.1
Installed QuadGK ────────────────────── v2.3.1
Installed WoodburyMatrices ──────────── v0.5.0
Installed DataAPI ───────────────────── v1.1.0
Installed Requires ──────────────────── v1.0.0
Installed LearnBase ─────────────────── v0.2.2
Installed StatsBase ─────────────────── v0.32.0
Installed Arpack ────────────────────── v0.4.0
Installed StatsFuns ─────────────────── v0.9.3
Installed Optim ─────────────────────── v0.20.1
Installed WeakRefStrings ────────────── v0.6.2
Installed SortingAlgorithms ─────────── v0.3.1
Installed OpenBLAS_jll ──────────────── v0.3.7+5
Installed Missings ──────────────────── v0.4.3
Installed StructArrays ──────────────── v0.4.1
Installed NLSolversBase ─────────────── v7.6.1
Installed BinaryProvider ────────────── v0.5.8
Installed Tables ────────────────────── v0.2.11
Installed Colors ────────────────────── v0.11.2
Installed Loess ─────────────────────── v0.5.0
Installed Parameters ────────────────── v0.12.0
Installed IntelOpenMP_jll ───────────── v2018.0.3+0
Installed Compat ────────────────────── v2.2.0
Installed OrderedCollections ────────── v1.1.0
Installed IterTools ─────────────────── v1.3.0
Installed Widgets ───────────────────── v0.6.2
Installed CommonSubexpressions ──────── v0.2.0
Installed Ratios ────────────────────── v0.3.1
Installed PDMats ────────────────────── v0.9.11
Installed FFTW_jll ──────────────────── v3.3.9+3
Installed DiffResults ───────────────── v1.0.2
Installed DataStructures ────────────── v0.17.9
Installed Reexport ──────────────────── v0.2.0
Installed Observables ───────────────── v0.2.3
Installed DataValues ────────────────── v0.4.13
Installed ArrayInterface ────────────── v2.3.1
Installed OnlineStatsBase ───────────── v1.0.2
Installed DataValueInterfaces ───────── v1.0.0
Installed MKL_jll ───────────────────── v2019.0.117+2
Installed SpecialFunctions ──────────── v0.9.0
Installed StaticArrays ──────────────── v0.12.1
Installed PositiveFactorizations ────── v0.2.3
Installed FiniteDiff ────────────────── v2.1.0
Installed ForwardDiff ───────────────── v0.10.9
Installed DiffRules ─────────────────── v1.0.0
Installed PooledArrays ──────────────── v0.5.3
Installed AbstractFFTs ──────────────── v0.5.0
Installed Distributions ─────────────── v0.22.4
##### 7.0%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ## 2.8%####### 10.2%############## 20.6%######################## 33.4%#################################### 50.7%#################################################### 72.7%######################################################################## 100.0%
#=#=# ################################################# 69.0%######################################################################## 100.0%
#=#=# ############ 16.8%############################### 43.8%############################################################ 84.0%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
[ba7d4641] + Recombinase v0.1.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[13072b0f] + AxisAlgorithms v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[3da002f7] + ColorTypes v0.9.1
[5ae59095] + Colors v0.11.2
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.13
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.22.4
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[1a297f60] + FillArrays v0.8.4
[6a86dc24] + FiniteDiff v2.1.0
[53c48c17] + FixedPointNumbers v0.7.1
[f6369f11] + ForwardDiff v0.10.9
[6deec6e2] + IndexedTables v0.12.4
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.8
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[5ab0869b] + KernelDensity v0.5.1
[7f8f8fb0] + LearnBase v0.2.2
[d3d80556] + LineSearches v7.0.1
[4345ca2d] + Loess v0.5.0
[856f044c] + MKL_jll v2019.0.117+2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.6.1
[77ba4419] + NaNMath v0.3.3
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v1.0.2
[925886fa] + OnlineStatsBase v1.0.2
[4536629a] + OpenBLAS_jll v0.3.7+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.20.1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.3.1
[c84ed2f1] + Ratios v0.3.1
[ba7d4641] + Recombinase v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[09ab397b] + StructArrays v0.4.1
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v0.2.11
[ea10d353] + WeakRefStrings v0.6.2
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.5.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Building FFTW ─→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Testing Recombinase
Status `/tmp/jl_gwPOwI/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+2
[4fba245c] ArrayInterface v2.3.1
[13072b0f] AxisAlgorithms v1.0.0
[b99e7846] BinaryProvider v0.5.8
[3da002f7] ColorTypes v0.9.1
[5ae59095] Colors v0.11.2
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[864edb3b] DataStructures v0.17.9
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.13
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.22.4
[7a1cc6ca] FFTW v1.2.0
[f5851436] FFTW_jll v3.3.9+3
[1a297f60] FillArrays v0.8.4
[6a86dc24] FiniteDiff v2.1.0
[53c48c17] FixedPointNumbers v0.7.1
[f6369f11] ForwardDiff v0.10.9
[6deec6e2] IndexedTables v0.12.4
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.8
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[5ab0869b] KernelDensity v0.5.1
[7f8f8fb0] LearnBase v0.2.2
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[856f044c] MKL_jll v2019.0.117+2
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.6.1
[77ba4419] NaNMath v0.3.3
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v1.0.2
[925886fa] OnlineStatsBase v1.0.2
[4536629a] OpenBLAS_jll v0.3.7+5
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[429524aa] Optim v0.20.1
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.11
[d96e819e] Parameters v0.12.0
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.3.1
[c84ed2f1] Ratios v0.3.1
[ba7d4641] Recombinase v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.0
[79098fc4] Rmath v0.6.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[4c63d2b9] StatsFuns v0.9.3
[09ab397b] StructArrays v0.4.1
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v0.2.11
[ea10d353] WeakRefStrings v0.6.2
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.5.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
ERROR: LoadError: LoadError: UndefVarError: @get! not defined
Stacktrace:
[1] include(::Module, ::String) at ./Base.jl:377
[2] include(::String) at /home/pkgeval/.julia/packages/Requires/hw5Ne/src/Requires.jl:1
[3] top-level scope at /home/pkgeval/.julia/packages/Requires/hw5Ne/src/Requires.jl:6
[4] include(::Module, ::String) at ./Base.jl:377
[5] top-level scope at none:2
[6] eval at ./boot.jl:331 [inlined]
[7] eval(::Expr) at ./client.jl:449
[8] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Requires/hw5Ne/src/require.jl:1
in expression starting at /home/pkgeval/.julia/packages/Requires/hw5Ne/src/Requires.jl:6
ERROR: LoadError: Failed to precompile Requires [ae029012-a4dd-5104-9daa-d747884805df] to /home/pkgeval/.julia/compiled/v1.5/Requires/IyxeS_16fTZ.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/ArrayInterface/PQXWA/src/ArrayInterface.jl:3
ERROR: LoadError: Failed to precompile ArrayInterface [4fba245c-0d91-5ea0-9b3e-6abc04ee57a9] to /home/pkgeval/.julia/compiled/v1.5/ArrayInterface/7bROb_16fTZ.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/FiniteDiff/EBys0/src/FiniteDiff.jl:4
ERROR: LoadError: Failed to precompile FiniteDiff [6a86dc24-6348-571c-b903-95158fe2bd41] to /home/pkgeval/.julia/compiled/v1.5/FiniteDiff/AIIBE_16fTZ.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/NLSolversBase/mGaJg/src/NLSolversBase.jl:5
ERROR: LoadError: Failed to precompile NLSolversBase [d41bc354-129a-5804-8e4c-c37616107c6c] to /home/pkgeval/.julia/compiled/v1.5/NLSolversBase/NEDD6_16fTZ.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Optim/SFpsz/src/Optim.jl:18
ERROR: LoadError: Failed to precompile Optim [429524aa-4258-5aef-a3af-852621145aeb] to /home/pkgeval/.julia/compiled/v1.5/Optim/R5uoh_16fTZ.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/KernelDensity/FYY3d/src/KernelDensity.jl:5
ERROR: LoadError: Failed to precompile KernelDensity [5ab0869b-81aa-558d-bb23-cbf5423bbe9b] to /home/pkgeval/.julia/compiled/v1.5/KernelDensity/4QyGx_16fTZ.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Recombinase/ePUim/src/Recombinase.jl:7
ERROR: LoadError: Failed to precompile Recombinase [ba7d4641-94f4-5bcf-8684-37ba860b1597] to /home/pkgeval/.julia/compiled/v1.5/Recombinase/5Efe1_16fTZ.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:439
[7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/Recombinase/ePUim/test/runtests.jl:3
ERROR: Package Recombinase errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13