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1.5.2-pre-be8475f41a.log
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Julia Version 1.5.2-pre.25
Commit be8475f41a (2020-09-09 06:41 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed RangeArrays ───────────────── v0.3.2
Installed DataValueInterfaces ───────── v1.0.0
Installed EllipsisNotation ──────────── v0.4.0
Installed PooledArrays ──────────────── v0.5.3
Installed Requires ──────────────────── v1.0.2
Installed Diversity ─────────────────── v0.5.1
Installed DataAPI ───────────────────── v1.3.0
Installed DataFrames ────────────────── v0.20.2
Installed TableTraits ───────────────── v1.0.0
Installed IntervalSets ──────────────── v0.5.1
Installed Parsers ───────────────────── v1.0.10
Installed SortingAlgorithms ─────────── v0.3.1
Installed Compat ────────────────────── v3.15.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed AxisArrays ────────────────── v0.4.3
Installed OrderedCollections ────────── v1.3.0
Installed InvertedIndices ───────────── v1.0.0
Installed Missings ──────────────────── v0.4.4
Installed EcoBase ───────────────────── v0.1.3
Installed JSON ──────────────────────── v0.21.1
Installed Tables ────────────────────── v1.0.5
Installed RecipesBase ───────────────── v1.0.2
Installed Reexport ──────────────────── v0.2.0
Installed IterTools ─────────────────── v1.3.0
Installed DataStructures ────────────── v0.18.4
Installed CategoricalArrays ─────────── v0.7.7
Updating `~/.julia/environments/v1.5/Project.toml`
[d3d5718d] + Diversity v0.5.1
Updating `~/.julia/environments/v1.5/Manifest.toml`
[39de3d68] + AxisArrays v0.4.3
[324d7699] + CategoricalArrays v0.7.7
[34da2185] + Compat v3.15.0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.18.4
[e2d170a0] + DataValueInterfaces v1.0.0
[d3d5718d] + Diversity v0.5.1
[a58aae7d] + EcoBase v0.1.3
[da5c29d0] + EllipsisNotation v0.4.0
[8197267c] + IntervalSets v0.5.1
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[e1d29d7a] + Missings v0.4.4
[bac558e1] + OrderedCollections v1.3.0
[69de0a69] + Parsers v1.0.10
[2dfb63ee] + PooledArrays v0.5.3
[b3c3ace0] + RangeArrays v0.3.2
[3cdcf5f2] + RecipesBase v1.0.2
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.2
[a2af1166] + SortingAlgorithms v0.3.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing Diversity
┌ Error: Pkg.Resolve.ResolverError("Unsatisfiable requirements detected for package Phylo [aea672f4]:\n Phylo [aea672f4] log:\n ├─possible versions are: [0.3.1-0.3.3, 0.4.0-0.4.3] or uninstalled\n ├─restricted to versions 0.4.1-0.4 by an explicit requirement, leaving only versions 0.4.1-0.4.3\n └─restricted by compatibility requirements with DataStructures [864edb3b] to versions: uninstalled — no versions left\n └─DataStructures [864edb3b] log:\n ├─possible versions are: [0.9.0, 0.10.0, 0.11.0-0.11.1, 0.12.0, 0.13.0, 0.14.0-0.14.1, 0.15.0, 0.16.1, 0.17.0-0.17.20, 0.18.0-0.18.4] or uninstalled\n └─restricted to versions 0.18.4 by an explicit requirement, leaving only versions 0.18.4", nothing)
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1427
┌ Error: Error building `RCall`:
│ PREFIX=/home/pkgeval/.julia/conda/3
│ Unpacking payload ...
│ 0%| | 0/35 [00:00<?, ?it/s]Extracting : requests-2.23.0-py38_0.conda: 0%| | 0/35 [00:00<?, ?it/s]Extracting : requests-2.23.0-py38_0.conda: 3%|2 | 1/35 [00:00<00:13, 2.61it/s]Extracting : urllib3-1.25.8-py38_0.conda: 3%|2 | 1/35 [00:00<00:13, 2.61it/s] Extracting : pyopenssl-19.1.0-py38_0.conda: 6%|5 | 2/35 [00:00<00:12, 2.61it/s]Extracting : pip-20.0.2-py38_3.conda: 9%|8 | 3/35 [00:00<00:12, 2.61it/s] Extracting : pip-20.0.2-py38_3.conda: 11%|#1 | 4/35 [00:00<00:09, 3.22it/s]Extracting : wheel-0.34.2-py38_0.conda: 11%|#1 | 4/35 [00:00<00:09, 3.22it/s]Extracting : cryptography-2.9.2-py38h1ba5d50_0.conda: 14%|#4 | 5/35 [00:00<00:09, 3.22it/s]Extracting : setuptools-46.4.0-py38_0.conda: 17%|#7 | 6/35 [00:00<00:09, 3.22it/s] Extracting : conda-package-handling-1.6.1-py38h7b6447c_0.conda: 20%|## | 7/35 [00:00<00:08, 3.22it/s]Extracting : cffi-1.14.0-py38he30daa8_1.conda: 23%|##2 | 8/35 [00:00<00:08, 3.22it/s] Extracting : tqdm-4.46.0-py_0.conda: 26%|##5 | 9/35 [00:00<00:08, 3.22it/s] Extracting : six-1.14.0-py38_0.conda: 29%|##8 | 10/35 [00:00<00:07, 3.22it/s]Extracting : ruamel_yaml-0.15.87-py38h7b6447c_0.conda: 31%|###1 | 11/35 [00:00<00:07, 3.22it/s]Extracting : pysocks-1.7.1-py38_0.conda: 34%|###4 | 12/35 [00:00<00:07, 3.22it/s] Extracting : pycparser-2.20-py_0.conda: 37%|###7 | 13/35 [00:00<00:06, 3.22it/s] Extracting : pycosat-0.6.3-py38h7b6447c_1.conda: 40%|#### | 14/35 [00:00<00:06, 3.22it/s]Extracting : idna-2.9-py_1.conda: 43%|####2 | 15/35 [00:00<00:06, 3.22it/s] Extracting : chardet-3.0.4-py38_1003.conda: 46%|####5 | 16/35 [00:00<00:05, 3.22it/s]Extracting : certifi-2020.4.5.1-py38_0.conda: 49%|####8 | 17/35 [00:00<00:05, 3.22it/s]Extracting : sqlite-3.31.1-h62c20be_1.conda: 51%|#####1 | 18/35 [00:00<00:05, 3.22it/s] Extracting : tk-8.6.8-hbc83047_0.conda: 54%|#####4 | 19/35 [00:00<00:04, 3.22it/s] Extracting : tk-8.6.8-hbc83047_0.conda: 57%|#####7 | 20/35 [00:00<00:03, 4.56it/s]Extracting : readline-8.0-h7b6447c_0.conda: 57%|#####7 | 20/35 [00:00<00:03, 4.56it/s]Extracting : libedit-3.1.20181209-hc058e9b_0.conda: 60%|###### | 21/35 [00:00<00:03, 4.56it/s]Extracting : zlib-1.2.11-h7b6447c_3.conda: 63%|######2 | 22/35 [00:00<00:02, 4.56it/s] Extracting : yaml-0.1.7-had09818_2.conda: 66%|######5 | 23/35 [00:00<00:02, 4.56it/s] Extracting : xz-5.2.5-h7b6447c_0.conda: 69%|######8 | 24/35 [00:00<00:02, 4.56it/s] Extracting : openssl-1.1.1g-h7b6447c_0.conda: 71%|#######1 | 25/35 [00:00<00:02, 4.56it/s]Extracting : ncurses-6.2-he6710b0_1.conda: 74%|#######4 | 26/35 [00:01<00:01, 4.56it/s] Extracting : ncurses-6.2-he6710b0_1.conda: 77%|#######7 | 27/35 [00:01<00:01, 6.14it/s]Extracting : libffi-3.3-he6710b0_1.conda: 77%|#######7 | 27/35 [00:01<00:01, 6.14it/s] Extracting : libgcc-ng-9.1.0-hdf63c60_0.conda: 80%|######## | 28/35 [00:01<00:01, 6.14it/s]Extracting : libstdcxx-ng-9.1.0-hdf63c60_0.conda: 83%|########2 | 29/35 [00:01<00:00, 6.14it/s]Extracting : ld_impl_linux-64-2.33.1-h53a641e_7.conda: 86%|########5 | 30/35 [00:01<00:00, 6.14it/s]Extracting : ca-certificates-2020.1.1-0.conda: 89%|########8 | 31/35 [00:01<00:00, 6.14it/s] Extracting : _libgcc_mutex-0.1-main.conda: 91%|#########1| 32/35 [00:01<00:00, 6.14it/s] Extracting : python-3.8.3-hcff3b4d_0.conda: 94%|#########4| 33/35 [00:01<00:00, 6.14it/s]Extracting : python-3.8.3-hcff3b4d_0.conda: 97%|#########7| 34/35 [00:01<00:00, 6.85it/s]Extracting : conda-4.8.3-py38_0.tar.bz2: 97%|#########7| 34/35 [00:02<00:00, 6.85it/s] Collecting package metadata (current_repodata.json): ...working... done
│ Solving environment: ...working... done
│
│ ## Package Plan ##
│
│ environment location: /home/pkgeval/.julia/conda/3
│
│ added / updated specs:
│ - _libgcc_mutex==0.1=main
│ - ca-certificates==2020.1.1=0
│ - certifi==2020.4.5.1=py38_0
│ - cffi==1.14.0=py38he30daa8_1
│ - chardet==3.0.4=py38_1003
│ - conda-package-handling==1.6.1=py38h7b6447c_0
│ - conda==4.8.3=py38_0
│ - cryptography==2.9.2=py38h1ba5d50_0
│ - idna==2.9=py_1
│ - ld_impl_linux-64==2.33.1=h53a641e_7
│ - libedit==3.1.20181209=hc058e9b_0
│ - libffi==3.3=he6710b0_1
│ - libgcc-ng==9.1.0=hdf63c60_0
│ - libstdcxx-ng==9.1.0=hdf63c60_0
│ - ncurses==6.2=he6710b0_1
│ - openssl==1.1.1g=h7b6447c_0
│ - pip==20.0.2=py38_3
│ - pycosat==0.6.3=py38h7b6447c_1
│ - pycparser==2.20=py_0
│ - pyopenssl==19.1.0=py38_0
│ - pysocks==1.7.1=py38_0
│ - python==3.8.3=hcff3b4d_0
│ - readline==8.0=h7b6447c_0
│ - requests==2.23.0=py38_0
│ - ruamel_yaml==0.15.87=py38h7b6447c_0
│ - setuptools==46.4.0=py38_0
│ - six==1.14.0=py38_0
│ - sqlite==3.31.1=h62c20be_1
│ - tk==8.6.8=hbc83047_0
│ - tqdm==4.46.0=py_0
│ - urllib3==1.25.8=py38_0
│ - wheel==0.34.2=py38_0
│ - xz==5.2.5=h7b6447c_0
│ - yaml==0.1.7=had09818_2
│ - zlib==1.2.11=h7b6447c_3
│
│
│ The following NEW packages will be INSTALLED:
│
│ _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
│ ca-certificates pkgs/main/linux-64::ca-certificates-2020.1.1-0
│ certifi pkgs/main/linux-64::certifi-2020.4.5.1-py38_0
│ cffi pkgs/main/linux-64::cffi-1.14.0-py38he30daa8_1
│ chardet pkgs/main/linux-64::chardet-3.0.4-py38_1003
│ conda pkgs/main/linux-64::conda-4.8.3-py38_0
│ conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.6.1-py38h7b6447c_0
│ cryptography pkgs/main/linux-64::cryptography-2.9.2-py38h1ba5d50_0
│ idna pkgs/main/noarch::idna-2.9-py_1
│ ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
│ libedit pkgs/main/linux-64::libedit-3.1.20181209-hc058e9b_0
│ libffi pkgs/main/linux-64::libffi-3.3-he6710b0_1
│ libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
│ libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
│ ncurses pkgs/main/linux-64::ncurses-6.2-he6710b0_1
│ openssl pkgs/main/linux-64::openssl-1.1.1g-h7b6447c_0
│ pip pkgs/main/linux-64::pip-20.0.2-py38_3
│ pycosat pkgs/main/linux-64::pycosat-0.6.3-py38h7b6447c_1
│ pycparser pkgs/main/noarch::pycparser-2.20-py_0
│ pyopenssl pkgs/main/linux-64::pyopenssl-19.1.0-py38_0
│ pysocks pkgs/main/linux-64::pysocks-1.7.1-py38_0
│ python pkgs/main/linux-64::python-3.8.3-hcff3b4d_0
│ readline pkgs/main/linux-64::readline-8.0-h7b6447c_0
│ requests pkgs/main/linux-64::requests-2.23.0-py38_0
│ ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.87-py38h7b6447c_0
│ setuptools pkgs/main/linux-64::setuptools-46.4.0-py38_0
│ six pkgs/main/linux-64::six-1.14.0-py38_0
│ sqlite pkgs/main/linux-64::sqlite-3.31.1-h62c20be_1
│ tk pkgs/main/linux-64::tk-8.6.8-hbc83047_0
│ tqdm pkgs/main/noarch::tqdm-4.46.0-py_0
│ urllib3 pkgs/main/linux-64::urllib3-1.25.8-py38_0
│ wheel pkgs/main/linux-64::wheel-0.34.2-py38_0
│ xz pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
│ yaml pkgs/main/linux-64::yaml-0.1.7-had09818_2
│ zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3
│
│
│ Preparing transaction: ...working... done
│ Executing transaction: ...working... done
│ installation finished.
│ Warning: 'defaults' already in 'channels' list, moving to the top
│ Collecting package metadata (current_repodata.json): ...working... done
│ Solving environment: ...working... done
│
│ ## Package Plan ##
│
│ environment location: /home/pkgeval/.julia/conda/3
│
│ added / updated specs:
│ - conda
│
│
│ The following packages will be downloaded:
│
│ package | build
│ ---------------------------|-----------------
│ brotlipy-0.7.0 |py38h7b6447c_1000 322 KB
│ ca-certificates-2020.7.22 | 0 125 KB
│ certifi-2020.6.20 | py38_0 156 KB
│ cffi-1.14.2 | py38he30daa8_0 227 KB
│ conda-4.8.4 | py38_0 2.8 MB
│ cryptography-3.1 | py38h1ba5d50_0 564 KB
│ idna-2.10 | py_0 50 KB
│ libedit-3.1.20191231 | h14c3975_1 116 KB
│ libffi-3.3 | he6710b0_2 50 KB
│ pip-20.2.2 | py38_0 1.7 MB
│ pycparser-2.20 | py_2 94 KB
│ pyopenssl-19.1.0 | py_1 48 KB
│ requests-2.24.0 | py_0 56 KB
│ ruamel_yaml-0.15.87 | py38h7b6447c_1 249 KB
│ setuptools-49.6.0 | py38_0 748 KB
│ six-1.15.0 | py_0 13 KB
│ sqlite-3.33.0 | h62c20be_0 1.1 MB
│ tk-8.6.10 | hbc83047_0 3.0 MB
│ tqdm-4.48.2 | py_0 63 KB
│ urllib3-1.25.10 | py_0 98 KB
│ wheel-0.35.1 | py_0 37 KB
│ yaml-0.2.5 | h7b6447c_0 75 KB
│ ------------------------------------------------------------
│ Total: 11.7 MB
│
│ The following NEW packages will be INSTALLED:
│
│ brotlipy pkgs/main/linux-64::brotlipy-0.7.0-py38h7b6447c_1000
│
│ The following packages will be UPDATED:
│
│ ca-certificates 2020.1.1-0 --> 2020.7.22-0
│ certifi 2020.4.5.1-py38_0 --> 2020.6.20-py38_0
│ cffi 1.14.0-py38he30daa8_1 --> 1.14.2-py38he30daa8_0
│ conda 4.8.3-py38_0 --> 4.8.4-py38_0
│ cryptography 2.9.2-py38h1ba5d50_0 --> 3.1-py38h1ba5d50_0
│ idna 2.9-py_1 --> 2.10-py_0
│ libedit 3.1.20181209-hc058e9b_0 --> 3.1.20191231-h14c3975_1
│ libffi 3.3-he6710b0_1 --> 3.3-he6710b0_2
│ pip 20.0.2-py38_3 --> 20.2.2-py38_0
│ pycparser 2.20-py_0 --> 2.20-py_2
│ pyopenssl pkgs/main/linux-64::pyopenssl-19.1.0-~ --> pkgs/main/noarch::pyopenssl-19.1.0-py_1
│ requests pkgs/main/linux-64::requests-2.23.0-p~ --> pkgs/main/noarch::requests-2.24.0-py_0
│ ruamel_yaml 0.15.87-py38h7b6447c_0 --> 0.15.87-py38h7b6447c_1
│ setuptools 46.4.0-py38_0 --> 49.6.0-py38_0
│ six pkgs/main/linux-64::six-1.14.0-py38_0 --> pkgs/main/noarch::six-1.15.0-py_0
│ sqlite 3.31.1-h62c20be_1 --> 3.33.0-h62c20be_0
│ tk 8.6.8-hbc83047_0 --> 8.6.10-hbc83047_0
│ tqdm 4.46.0-py_0 --> 4.48.2-py_0
│ urllib3 pkgs/main/linux-64::urllib3-1.25.8-py~ --> pkgs/main/noarch::urllib3-1.25.10-py_0
│ wheel pkgs/main/linux-64::wheel-0.34.2-py38~ --> pkgs/main/noarch::wheel-0.35.1-py_0
│ yaml 0.1.7-had09818_2 --> 0.2.5-h7b6447c_0
│
│
│ Preparing transaction: ...working... done
│ Verifying transaction: ...working... done
│ Executing transaction: ...working... done
│ Collecting package metadata (current_repodata.json): ...working... done
│ Solving environment: ...working... done
│
│ ## Package Plan ##
│
│ environment location: /home/pkgeval/.julia/conda/3
│
│ added / updated specs:
│ - r-base
│
│
│ The following packages will be downloaded:
│
│ package | build
│ ---------------------------|-----------------
│ _r-mutex-1.0.0 | anacondar_1 3 KB
│ cairo-1.14.12 | h8948797_3 906 KB
│ fontconfig-2.13.0 | h9420a91_0 227 KB
│ freetype-2.10.2 | h5ab3b9f_0 608 KB
│ fribidi-1.0.10 | h7b6447c_0 103 KB
│ glib-2.65.0 | h3eb4bd4_0 2.9 MB
│ graphite2-1.3.14 | h23475e2_0 99 KB
│ harfbuzz-2.4.0 | hca77d97_1 850 KB
│ icu-58.2 | he6710b0_3 10.5 MB
│ jpeg-9b | h024ee3a_2 214 KB
│ libgcc-7.2.0 | h69d50b8_2 269 KB
│ libpng-1.6.37 | hbc83047_0 278 KB
│ libtiff-4.1.0 | h2733197_1 449 KB
│ libuuid-1.0.3 | h1bed415_2 15 KB
│ libxcb-1.14 | h7b6447c_0 505 KB
│ libxml2-2.9.10 | he19cac6_1 1.2 MB
│ lz4-c-1.9.2 | he6710b0_1 190 KB
│ pango-1.45.3 | hd140c19_0 361 KB
│ pcre-8.44 | he6710b0_0 212 KB
│ pixman-0.40.0 | h7b6447c_0 370 KB
│ r-base-3.2.2 | 0 18.9 MB
│ zstd-1.4.5 | h9ceee32_0 619 KB
│ ------------------------------------------------------------
│ Total: 39.6 MB
│
│ The following NEW packages will be INSTALLED:
│
│ _r-mutex pkgs/r/linux-64::_r-mutex-1.0.0-anacondar_1
│ cairo pkgs/main/linux-64::cairo-1.14.12-h8948797_3
│ fontconfig pkgs/main/linux-64::fontconfig-2.13.0-h9420a91_0
│ freetype pkgs/main/linux-64::freetype-2.10.2-h5ab3b9f_0
│ fribidi pkgs/main/linux-64::fribidi-1.0.10-h7b6447c_0
│ glib pkgs/main/linux-64::glib-2.65.0-h3eb4bd4_0
│ graphite2 pkgs/main/linux-64::graphite2-1.3.14-h23475e2_0
│ harfbuzz pkgs/main/linux-64::harfbuzz-2.4.0-hca77d97_1
│ icu pkgs/main/linux-64::icu-58.2-he6710b0_3
│ jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2
│ libgcc pkgs/main/linux-64::libgcc-7.2.0-h69d50b8_2
│ libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0
│ libtiff pkgs/main/linux-64::libtiff-4.1.0-h2733197_1
│ libuuid pkgs/main/linux-64::libuuid-1.0.3-h1bed415_2
│ libxcb pkgs/main/linux-64::libxcb-1.14-h7b6447c_0
│ libxml2 pkgs/main/linux-64::libxml2-2.9.10-he19cac6_1
│ lz4-c pkgs/main/linux-64::lz4-c-1.9.2-he6710b0_1
│ pango pkgs/main/linux-64::pango-1.45.3-hd140c19_0
│ pcre pkgs/main/linux-64::pcre-8.44-he6710b0_0
│ pixman pkgs/main/linux-64::pixman-0.40.0-h7b6447c_0
│ r-base pkgs/r/linux-64::r-base-3.2.2-0
│ zstd pkgs/main/linux-64::zstd-1.4.5-h9ceee32_0
│
│
│ Preparing transaction: ...working... done
│ Verifying transaction: ...working... done
│ Executing transaction: ...working... done
│ [ Info: Installing R via Conda. To use a different R installation, set the "R_HOME" environment variable and re-run Pkg.build("RCall").
│ [ Info: Downloading miniconda installer ...
│ [ Info: Installing miniconda ...
│ [ Info: Running `conda config --add channels defaults --file /home/pkgeval/.julia/conda/3/condarc-julia.yml --force` in root environment
│ [ Info: Running `conda update -q -y conda` in root environment
│ [ Info: Running `conda config --add channels r --file /home/pkgeval/.julia/conda/3/condarc-julia.yml --force` in root environment
│ [ Info: Running `conda install -q -y r-base` in root environment
│ ERROR: could not load library "/home/pkgeval/.julia/conda/3/lib/R/lib/libR.so"
│ libreadline.so.6: cannot open shared object file: No such file or directory
│ ERROR: LoadError: Try adding /home/pkgeval/.julia/conda/3/lib/R/lib to the "LD_LIBRARY_PATH" environmental variable and restarting Julia.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] validate_libR(::String) at /home/pkgeval/.julia/packages/RCall/jOnwc/deps/setup.jl:26
│ [3] locate_libR(::String) at /home/pkgeval/.julia/packages/RCall/jOnwc/deps/setup.jl:43
│ [4] top-level scope at /home/pkgeval/.julia/packages/RCall/jOnwc/deps/build.jl:32
│ [5] include(::String) at ./client.jl:457
│ [6] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/RCall/jOnwc/deps/build.jl:11
│ caused by [exception 1]
│ could not load library "/home/pkgeval/.julia/conda/3/lib/R/lib/libR.so"
│ libreadline.so.6: cannot open shared object file: No such file or directory
│ Stacktrace:
│ [1] dlopen(::String, ::UInt32; throw_error::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Libdl/src/Libdl.jl:109
│ [2] dlopen at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Libdl/src/Libdl.jl:109 [inlined] (repeats 2 times)
│ [3] validate_libR(::String) at /home/pkgeval/.julia/packages/RCall/jOnwc/deps/setup.jl:16
│ [4] locate_libR(::String) at /home/pkgeval/.julia/packages/RCall/jOnwc/deps/setup.jl:43
│ [5] top-level scope at /home/pkgeval/.julia/packages/RCall/jOnwc/deps/build.jl:32
│ [6] include(::String) at ./client.jl:457
│ [7] top-level scope at none:5
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:949
Status `/tmp/jl_bFInXD/Project.toml`
[39de3d68] AxisArrays v0.4.3
[a93c6f00] DataFrames v0.20.2
[b4f34e82] Distances v0.8.2
[d3d5718d] Diversity v0.5.1
[a58aae7d] EcoBase v0.1.3
[e1d29d7a] Missings v0.4.4
[aea672f4] Phylo v0.4.3
[6f49c342] RCall v0.13.6
[3cdcf5f2] RecipesBase v1.0.2
[ae029012] Requires v1.0.2
[2913bbd2] StatsBase v0.33.1
[b77e0a4c] InteractiveUtils
[37e2e46d] LinearAlgebra
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_bFInXD/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[39de3d68] AxisArrays v0.4.3
[324d7699] CategoricalArrays v0.7.7
[34da2185] Compat v3.15.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[187b0558] ConstructionBase v1.0.0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.13
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.23.11
[d3d5718d] Diversity v0.5.1
[a58aae7d] EcoBase v0.1.3
[da5c29d0] EllipsisNotation v0.4.0
[1a297f60] FillArrays v0.9.6
[d25df0c9] Inflate v0.1.2
[8197267c] IntervalSets v0.5.1
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[1c8ee90f] IterableTables v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[093fc24a] LightGraphs v1.3.3
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.0
[90014a1f] PDMats v0.10.0
[69de0a69] Parsers v1.0.10
[aea672f4] Phylo v0.4.3
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.4.1
[6f49c342] RCall v0.13.6
[b3c3ace0] RangeArrays v0.3.2
[3cdcf5f2] RecipesBase v1.0.2
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.2
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[1277b4bf] ShiftedArrays v1.0.0
[699a6c99] SimpleTraits v0.9.3
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.5
[3eaba693] StatsModels v0.6.14
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v1.0.5
[0796e94c] Tokenize v0.5.8
[1986cc42] Unitful v1.4.0
[81def892] VersionParsing v1.2.0
[1b915085] WinReg v0.3.1
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
[ Info: Running tests for files:
= API.jl
= Diversity.jl
= DiversityMeasure.jl
= Ecology.jl
= EffectiveNumbers.jl
= GeneralisedDiversities.jl
= Hill.jl
= Interface.jl
= Iterators.jl
= Jost.jl
= Metacommunity.jl
= Phylogenetics.jl
Test Summary: | Pass Total
* Testing API.jl | 2 2
Test Summary: |
* Testing Diversity.jl | No tests
Test Summary: | Pass Total
* Testing DiversityMeasure.jl | 67 67
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Test threw exception
Expression: (richness(communities))[!, :diversity] ≈ (subdiv(ᾱ(eco), 0))[!, :diversity]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0},Nothing,typeof(identity),Tuple{Base.RefValue{String}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0},Nothing,typeof(identity),Tuple{Base.RefValue{String}}}) at ./broadcast.jl:845
[5] generalisedrichness(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:46
[6] richness(::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:63
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:21
Test threw exception
Expression: (richness(Metacommunity(communities)))[!, :diversity] == (richness(communities))[!, :diversity]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0},Nothing,typeof(identity),Tuple{Base.RefValue{String}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0},Nothing,typeof(identity),Tuple{Base.RefValue{String}}}) at ./broadcast.jl:845
[5] generalisedrichness(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:46
[6] richness(::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:63
[7] richness(::Diversity.Metacommunity{Float64,Array{Float64,2},Array{Float64,2},Diversity.UniqueTypes,Diversity.Subcommunities}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:70
[8] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:21
[9] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[10] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:26
Test threw exception
Expression: (shannon(communities))[!, :diversity] ≈ log.((subdiv(ᾱ(eco), 1))[!, :diversity])
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(log),Tuple{Array{Float64,1}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(log),Tuple{Array{Float64,1}}}) at ./broadcast.jl:845
[5] generalisedshannon(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:111
[6] shannon(::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:129
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:26
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:27
Test threw exception
Expression: (shannon(Metacommunity(communities)))[!, :diversity] == (shannon(communities))[!, :diversity]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(log),Tuple{Array{Float64,1}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(log),Tuple{Array{Float64,1}}}) at ./broadcast.jl:845
[5] generalisedshannon(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:111
[6] shannon at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:129 [inlined]
[7] shannon(::Diversity.Metacommunity{Float64,Array{Float64,2},Array{Float64,2},Diversity.UniqueTypes,Diversity.Subcommunities}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:134
[8] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:27
[9] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[10] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:32
Test threw exception
Expression: (simpson(communities))[!, :diversity] ≈ (subdiv(ᾱ(eco), 2))[!, :diversity] .^ -1
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(Base.literal_pow),Tuple{Base.RefValue{typeof(^)},Array{Float64,1},Base.RefValue{Val{-1}}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(Base.literal_pow),Tuple{Base.RefValue{typeof(^)},Array{Float64,1},Base.RefValue{Val{-1}}}}) at ./broadcast.jl:845
[5] generalisedsimpson(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:175
[6] simpson(::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:195
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:32
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:33
Test threw exception
Expression: (simpson(Metacommunity(communities)))[!, :diversity] == (simpson(communities))[!, :diversity]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(Base.literal_pow),Tuple{Base.RefValue{typeof(^)},Array{Float64,1},Base.RefValue{Val{-1}}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(Base.literal_pow),Tuple{Base.RefValue{typeof(^)},Array{Float64,1},Base.RefValue{Val{-1}}}}) at ./broadcast.jl:845
[5] generalisedsimpson(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:175
[6] simpson at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:195 [inlined]
[7] simpson(::Diversity.Metacommunity{Float64,Array{Float64,2},Array{Float64,2},Diversity.UniqueTypes,Diversity.Subcommunities}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:200
[8] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:33
[9] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[10] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:38
Test threw exception
Expression: (jaccard(([1 0 0; 0 1 1])' / 3))[!, :diversity] .+ 1.0 ≈ [1.0]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:845
[5] generalisedjaccard(::Array{Float64,2}, ::Int64, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:246
[6] jaccard(::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:267
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:38
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:39
Test threw exception
Expression: (jaccard(Metacommunity(([1 0 1; 0 1 1])' / 4)))[!, :diversity] == (jaccard(([1 0 1; 0 1 1])' / 4))[!, :diversity]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:845
[5] generalisedjaccard(::Array{Float64,2}, ::Int64, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:246
[6] jaccard(::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:267
[7] jaccard(::Diversity.Metacommunity{Float64,Array{Float64,2},Array{Float64,2},Diversity.UniqueTypes,Diversity.Subcommunities}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:272
[8] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:39
[9] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[10] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Standard ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:43
Test threw exception
Expression: (jaccard(([1 0 1; 0 1 1])' / 4))[!, :diversity] ≈ [1.0 / 3.0]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:845
[5] generalisedjaccard(::Array{Float64,2}, ::Int64, ::Diversity.UniqueTypes) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:246
[6] jaccard(::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:267
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:43
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:20
Generalised ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Test threw exception
Expression: (generalisedrichness(metacommunityDiversity, communities, Z1))[!, :diversity] ≈ [1]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0},Nothing,typeof(identity),Tuple{Base.RefValue{String}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0},Nothing,typeof(identity),Tuple{Base.RefValue{String}}}) at ./broadcast.jl:845
[5] generalisedrichness(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.GeneralTypes{Float64,Array{Float64,2}}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:46
[6] generalisedrichness(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:33
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Generalised ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:51
Test threw exception
Expression: (generalisedrichness(subcommunityDiversity, communities))[!, :diversity] ≈ (richness(communities))[!, :diversity]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0},Nothing,typeof(identity),Tuple{Base.RefValue{String}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0},Nothing,typeof(identity),Tuple{Base.RefValue{String}}}) at ./broadcast.jl:845
[5] generalisedrichness(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.GeneralTypes{Float64,Array{Float64,2}}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:46
[6] generalisedrichness at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:33 [inlined] (repeats 2 times)
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:51
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Generalised ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:58
Test threw exception
Expression: (generalisedshannon(metacommunityDiversity, communities, Z1))[!, :diversity] .+ 1.0 ≈ [1.0]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(log),Tuple{Array{Float64,1}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(log),Tuple{Array{Float64,1}}}) at ./broadcast.jl:845
[5] generalisedshannon(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.GeneralTypes{Float64,Array{Float64,2}}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:111
[6] generalisedshannon(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:97
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:58
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Generalised ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:60
Test threw exception
Expression: (generalisedshannon(subcommunityDiversity, communities))[!, :diversity] ≈ (shannon(communities))[!, :diversity]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(log),Tuple{Array{Float64,1}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(log),Tuple{Array{Float64,1}}}) at ./broadcast.jl:845
[5] generalisedshannon(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.GeneralTypes{Float64,Array{Float64,2}}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:111
[6] generalisedshannon at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:97 [inlined] (repeats 2 times)
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:60
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Generalised ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:66
Test threw exception
Expression: (generalisedsimpson(metacommunityDiversity, communities, Z1))[!, :diversity] ≈ [1.0]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(Base.literal_pow),Tuple{Base.RefValue{typeof(^)},Array{Float64,1},Base.RefValue{Val{-1}}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(Base.literal_pow),Tuple{Base.RefValue{typeof(^)},Array{Float64,1},Base.RefValue{Val{-1}}}}) at ./broadcast.jl:845
[5] generalisedsimpson(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.GeneralTypes{Float64,Array{Float64,2}}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:175
[6] generalisedsimpson(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:161
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:66
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Generalised ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:68
Test threw exception
Expression: (generalisedsimpson(subcommunityDiversity, communities))[!, :diversity] ≈ (simpson(communities))[!, :diversity]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(Base.literal_pow),Tuple{Base.RefValue{typeof(^)},Array{Float64,1},Base.RefValue{Val{-1}}}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(Base.literal_pow),Tuple{Base.RefValue{typeof(^)},Array{Float64,1},Base.RefValue{Val{-1}}}}) at ./broadcast.jl:845
[5] generalisedsimpson(::Diversity.DiversityLevel, ::Array{Float64,2}, ::Diversity.GeneralTypes{Float64,Array{Float64,2}}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:175
[6] generalisedsimpson at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:161 [inlined] (repeats 2 times)
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:68
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Generalised ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:74
Test threw exception
Expression: (generalisedjaccard(([1 0 1; 0 1 1])' / 4, [0, Inf]))[!, :diversity] ≈ [1.0 / 3.0, 1.0]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:845
[5] generalisedjaccard(::Array{Float64,2}, ::Array{Float64,1}, ::Diversity.GeneralTypes{Float64,Array{Float64,2}}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:246
[6] generalisedjaccard(::Array{Float64,2}, ::Array{Float64,1}, ::Array{Float64,2}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:233 (repeats 2 times)
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:74
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Generalised ecological diversities: Error During Test at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:75
Test threw exception
Expression: (generalisedjaccard(([1 1 1; 1 1 1])' / 6, [0, 1]))[!, :diversity] ≈ [1.0, 1.0]
MethodError: no method matching ndims(::Type{DataFrames.LazyNewColDataFrame{Symbol}})
Closest candidates are:
ndims(!Matched::Base.Generator) at generator.jl:53
ndims(!Matched::Number) at number.jl:67
ndims(!Matched::Type{var"#s91"} where var"#s91"<:Number) at number.jl:68
...
Stacktrace:
[1] Base.Broadcast.BroadcastStyle(::Type{DataFrames.LazyNewColDataFrame{Symbol}}) at ./broadcast.jl:103
[2] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}) at ./broadcast.jl:420
[3] combine_styles(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:421
[4] materialize!(::DataFrames.LazyNewColDataFrame{Symbol}, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(-),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1},Nothing,typeof(/),Tuple{Array{Float64,1},Array{Float64,1}}},Int64}}) at ./broadcast.jl:845
[5] generalisedjaccard(::Array{Float64,2}, ::Array{Int64,1}, ::Diversity.GeneralTypes{Float64,Array{Float64,2}}) at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:246
[6] generalisedjaccard at /home/pkgeval/.julia/packages/Diversity/VrF4L/src/Ecology.jl:233 [inlined] (repeats 2 times)
[7] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:75
[8] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/test_Ecology.jl:49
Test Summary: | Pass Error Total
* Testing Ecology.jl | 9 17 26
Standard ecological diversities | 6 9 15
Generalised ecological diversities | 3 8 11
Test Summary: | Pass Error Total
* Testing Ecology.jl | 9 17 26
Standard ecological diversities | 6 9 15
Generalised ecological diversities | 3 8 11
ERROR: LoadError: Some tests did not pass: 9 passed, 0 failed, 17 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Diversity/VrF4L/test/runtests.jl:19
caused by [exception 1]
Some tests did not pass: 9 passed, 0 failed, 17 errored, 0 broken.
ERROR: Package Diversity errored during testing
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1578
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:328
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:315
[5] #test#61 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:67 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:67 [inlined]
[7] #test#60 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:66 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:66 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:65
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:65
[11] top-level scope at none:19