-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.3.1-pre-602e3006ec.log
294 lines (291 loc) · 15.8 KB
/
1.3.1-pre-602e3006ec.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
Julia Version 1.3.1-pre.19
Commit 602e3006ec (2019-12-17 12:50 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-6.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed ModelSanitizer ─ v0.3.0
Updating `~/.julia/environments/v1.3/Project.toml`
[913cd07a] + ModelSanitizer v0.3.0
Updating `~/.julia/environments/v1.3/Manifest.toml`
[913cd07a] + ModelSanitizer v0.3.0
Testing ModelSanitizer
Resolving package versions...
Installed StatsModels ───────────────── v0.6.2
Installed TimerOutputs ──────────────── v0.5.3
Installed StatsBase ─────────────────── v0.31.0
Installed MLJ ───────────────────────── v0.2.5
Installed MultivariateStats ─────────── v0.6.0
Installed MLJBase ───────────────────── v0.2.3
Installed PkgBenchmark ──────────────── v0.2.6
Installed MLJModels ─────────────────── v0.2.5
Installed ShiftedArrays ─────────────── v1.0.0
Installed DataFrames ────────────────── v0.18.4
Installed Requires ──────────────────── v0.5.2
Installed OrderedCollections ────────── v1.1.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed ScikitLearnBase ───────────── v0.5.0
Installed LIBLINEAR ─────────────────── v0.5.1
Installed DataStructures ────────────── v0.17.6
Installed WeakRefStrings ────────────── v0.6.1
Installed FilePathsBase ─────────────── v0.7.0
Installed Missings ──────────────────── v0.4.3
Installed Arpack_jll ────────────────── v3.5.0+2
Installed DataValueInterfaces ───────── v1.0.0
Installed CategoricalArrays ─────────── v0.5.2
Installed PooledArrays ──────────────── v0.5.2
Installed QuadGK ────────────────────── v2.3.1
Installed TableTraits ───────────────── v1.0.0
Installed Rmath ─────────────────────── v0.6.0
Installed RecipesBase ───────────────── v0.7.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Reexport ──────────────────── v0.2.0
Installed CSV ───────────────────────── v0.5.20
Installed IniFile ───────────────────── v0.5.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed DataAPI ───────────────────── v1.1.0
Installed OpenBLAS_jll ──────────────── v0.3.7+1
Installed ProgressMeter ─────────────── v1.2.0
Installed BinaryProvider ────────────── v0.5.8
Installed StatsFuns ─────────────────── v0.9.3
Installed SpecialFunctions ──────────── v0.9.0
Installed HTTP ──────────────────────── v0.8.8
Installed MbedTLS ───────────────────── v0.7.0
Installed Parsers ───────────────────── v0.3.10
Installed JSON ──────────────────────── v0.21.0
Installed LIBSVM ────────────────────── v0.4.0
Installed Arpack ────────────────────── v0.4.0
Installed FileIO ────────────────────── v1.2.0
Installed Tables ────────────────────── v0.2.11
Installed PDMats ────────────────────── v0.9.10
Installed Distances ─────────────────── v0.8.2
Installed Compat ────────────────────── v2.2.0
Installed RemoteFiles ───────────────── v0.3.1
Installed Distributions ─────────────── v0.19.2
Installed Coverage ──────────────────── v0.9.3
Installed BenchmarkTools ────────────── v0.4.3
Updating `/tmp/jl_OnC8WY/Project.toml`
[6e4b80f9] + BenchmarkTools v0.4.3
[a2441757] + Coverage v0.9.3
[a93c6f00] + DataFrames v0.18.4
[add582a8] + MLJ v0.2.5
[a7f614a8] + MLJBase v0.2.3
[d491faf4] + MLJModels v0.2.5
[913cd07a] + ModelSanitizer v0.3.0
[6f286f6a] + MultivariateStats v0.6.0
[32113eaa] + PkgBenchmark v0.2.6
[2913bbd2] + StatsBase v0.31.0
[3eaba693] + StatsModels v0.6.2
[a759f4b9] + TimerOutputs v0.5.3
[10745b16] + Statistics
[8dfed614] + Test
Updating `/tmp/jl_OnC8WY/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[6e4b80f9] + BenchmarkTools v0.4.3
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.20
[324d7699] + CategoricalArrays v0.5.2
[34da2185] + Compat v2.2.0
[a2441757] + Coverage v0.9.3
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.18.4
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.19.2
[5789e2e9] + FileIO v1.2.0
[48062228] + FilePathsBase v0.7.0
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[2d691ee1] + LIBLINEAR v0.5.1
[b1bec4e5] + LIBSVM v0.4.0
[add582a8] + MLJ v0.2.5
[a7f614a8] + MLJBase v0.2.3
[d491faf4] + MLJModels v0.2.5
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[6f286f6a] + MultivariateStats v0.6.0
[4536629a] + OpenBLAS_jll v0.3.7+1
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[32113eaa] + PkgBenchmark v0.2.6
[2dfb63ee] + PooledArrays v0.5.2
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[cbe49d4c] + RemoteFiles v0.3.1
[ae029012] + Requires v0.5.2
[79098fc4] + Rmath v0.6.0
[6e75b9c4] + ScikitLearnBase v0.5.0
[1277b4bf] + ShiftedArrays v1.0.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[2913bbd2] + StatsBase v0.31.0
[4c63d2b9] + StatsFuns v0.9.3
[3eaba693] + StatsModels v0.6.2
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[a759f4b9] + TimerOutputs v0.5.3
[ea10d353] + WeakRefStrings v0.6.1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building PkgBenchmark → `~/.julia/packages/PkgBenchmark/fIDIa/deps/build.log`
Building LIBLINEAR ───→ `~/.julia/packages/LIBLINEAR/yTdp5/deps/build.log`
Building Rmath ───────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Building MbedTLS ─────→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Building LIBSVM ──────→ `~/.julia/packages/LIBSVM/5Z99T/deps/build.log`
[ Info: Running Sandbox
Status `/tmp/jl_OnC8WY/Project.toml`
[6e4b80f9] BenchmarkTools v0.4.3
[a2441757] Coverage v0.9.3
[a93c6f00] DataFrames v0.18.4
[add582a8] MLJ v0.2.5
[a7f614a8] MLJBase v0.2.3
[d491faf4] MLJModels v0.2.5
[913cd07a] ModelSanitizer v0.3.0
[6f286f6a] MultivariateStats v0.6.0
[32113eaa] PkgBenchmark v0.2.6
[2913bbd2] StatsBase v0.31.0
[3eaba693] StatsModels v0.6.2
[a759f4b9] TimerOutputs v0.5.3
[10745b16] Statistics
[8dfed614] Test
Test Summary: | Pass Total
Unit tests | 118 118
mse(m, X[training_rows, :], y[training_rows]) = 0.8234120185430287
rmse(m, X[training_rows, :], y[training_rows]) = 0.9074205301529323
r2(m, X[training_rows, :], y[training_rows]) = 0.9305947689612921
mse(m, X[testing_rows, :], y[testing_rows]) = 1.2048342951865612
rmse(m, X[testing_rows, :], y[testing_rows]) = 1.0976494409357485
r2(m, X[testing_rows, :], y[testing_rows]) = 0.8514727738428906
mse(m, X[training_rows, :], y[training_rows]) = 0.8234120185430287
rmse(m, X[training_rows, :], y[training_rows]) = 0.9074205301529323
r2(m, X[training_rows, :], y[training_rows]) = 0.9305947689612921
mse(m, X[testing_rows, :], y[testing_rows]) = 1.2048342951865612
rmse(m, X[testing_rows, :], y[testing_rows]) = 1.0976494409357485
r2(m, X[testing_rows, :], y[testing_rows]) = 0.8514727738428906
mse(m, X[training_rows, :], y[training_rows]) = 0.8234120185430287
rmse(m, X[training_rows, :], y[training_rows]) = 0.9074205301529323
r2(m, X[training_rows, :], y[training_rows]) = 0.9305947689612921
mse(m, X[testing_rows, :], y[testing_rows]) = 1.2048342951865612
rmse(m, X[testing_rows, :], y[testing_rows]) = 1.0976494409357485
r2(m, X[testing_rows, :], y[testing_rows]) = 0.8514727738428906
┌ Warning: Replacing docs for `FileIO.filename :: Tuple{Any}` in module `FileIO`
└ @ Base.Docs docs/Docs.jl:223
┌ Warning: Replacing docs for `FileIO.file_extension :: Tuple{Any}` in module `FileIO`
└ @ Base.Docs docs/Docs.jl:223
ERROR: LoadError: LoadError: syntax: local variable name "N" conflicts with a static parameter
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/MLJ/XYSFt/src/composites.jl:113
[2] include at ./boot.jl:328 [inlined]
[3] include_relative(::Module, ::String) at ./loading.jl:1105
[4] include at ./Base.jl:31 [inlined]
[5] include(::String) at /home/pkgeval/.julia/packages/MLJ/XYSFt/src/MLJ.jl:1
[6] top-level scope at /home/pkgeval/.julia/packages/MLJ/XYSFt/src/MLJ.jl:88
[7] include at ./boot.jl:328 [inlined]
[8] include_relative(::Module, ::String) at ./loading.jl:1105
[9] include(::Module, ::String) at ./Base.jl:31
[10] top-level scope at none:2
[11] eval at ./boot.jl:330 [inlined]
[12] eval(::Expr) at ./client.jl:425
[13] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/MLJ/XYSFt/src/composites.jl:113
in expression starting at /home/pkgeval/.julia/packages/MLJ/XYSFt/src/MLJ.jl:88
integration-tests/test-proof-of-concept-mlj.jl: Error During Test at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:39
Got exception outside of a @test
LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to /home/pkgeval/.julia/compiled/v1.3/MLJ/rAU56_rWoHl.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
[3] _require(::Base.PkgId) at ./loading.jl:1024
[4] require(::Base.PkgId) at ./loading.jl:922
[5] require(::Module, ::Symbol) at ./loading.jl:917
[6] include at ./boot.jl:328 [inlined]
[7] include_relative(::Module, ::String) at ./loading.jl:1105
[8] include(::Module, ::String) at ./Base.jl:31
[9] include(::String) at ./client.jl:424
[10] macro expansion at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:41 [inlined]
[11] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107 [inlined]
[12] macro expansion at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:40 [inlined]
[13] macro expansion at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107 [inlined]
[14] _inner_runtests() at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:29
[15] macro expansion at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:51 [inlined]
[16] (::var"#3#5")() at ./task.jl:333
in expression starting at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/integration-tests/test-proof-of-concept-mlj.jl:1
Test Summary: | Pass Error Total
Integration tests | 203 1 204
integration-tests/test-proof-of-concept-dataframes.jl | 60 60
integration-tests/test-proof-of-concept-linearmodel | 143 143
integration-tests/test-proof-of-concept-mlj.jl | 1 1
ModelSanitizer.jl: Error During Test at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:63
Got exception outside of a @test
TaskFailedException:
Some tests did not pass: 203 passed, 0 failed, 1 errored, 0 broken.
Stacktrace:
[1] sync_end(::Array{Any,1}) at ./task.jl:300
[2] macro expansion at ./task.jl:319 [inlined]
[3] runtests() at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:49
[4] top-level scope at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:64
[5] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Test/src/Test.jl:1107
[6] top-level scope at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:64
[7] include at ./boot.jl:328 [inlined]
[8] include_relative(::Module, ::String) at ./loading.jl:1105
[9] include(::Module, ::String) at ./Base.jl:31
[10] include(::String) at ./client.jl:424
[11] top-level scope at none:6
[12] eval(::Module, ::Any) at ./boot.jl:330
[13] exec_options(::Base.JLOptions) at ./client.jl:263
[14] _start() at ./client.jl:460
Test Summary: | Error Total
ModelSanitizer.jl | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/ModelSanitizer/fYC4k/test/runtests.jl:63
ERROR: Package ModelSanitizer errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/Types.jl:113
[2] #test#131(::Bool, ::Nothing, ::Cmd, ::Cmd, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/Operations.jl:1372
[3] #test at ./none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Cmd, ::Cmd, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:253
[5] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:239
[6] #test#61 at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[7] test at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:233 [inlined]
[8] #test#60 at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[9] test at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:232 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[11] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.3/Pkg/src/API.jl:231
[12] top-level scope at none:12