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1.6.0-DEV-36effbe10a.log
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Julia Version 1.6.0-DEV.1117
Commit 36effbe10a (2020-10-02 17:38 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SpecialFunctions ───────────── v0.8.0
Installed SOM ────────────────────────── v0.4.1
Installed BinDeps ────────────────────── v1.0.1
Installed CategoricalArrays ──────────── v0.7.7
Installed DataStructures ─────────────── v0.17.20
Installed StatsBase ──────────────────── v0.32.2
Installed Distributions ──────────────── v0.21.9
Installed TimeZones ──────────────────── v1.4.0
Installed Arpack ─────────────────────── v0.4.0
Installed LaTeXStrings ───────────────── v1.2.0
Installed PyCall ─────────────────────── v1.92.1
Installed BinaryProvider ─────────────── v0.5.10
Installed Colors ─────────────────────── v0.12.4
Installed WeakRefStrings ─────────────── v0.6.2
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Tables ─────────────────────── v0.2.11
Installed DataFrames ─────────────────── v0.19.4
Installed FixedPointNumbers ──────────── v0.8.4
Installed Distances ──────────────────── v0.8.2
Installed FileIO ─────────────────────── v1.4.3
Installed ProgressMeter ──────────────── v1.4.0
Installed ColorTypes ─────────────────── v0.10.9
Installed VersionParsing ─────────────── v1.2.0
Installed EzXML ──────────────────────── v1.1.0
Installed Reexport ───────────────────── v0.2.0
Installed TranscodingStreams ─────────── v0.9.5
Installed OpenBLAS_jll ───────────────── v0.3.10+0
Installed JSON ───────────────────────── v0.21.1
Installed Requires ───────────────────── v1.1.0
Installed Rmath ──────────────────────── v0.6.1
Installed RecipesBase ────────────────── v1.1.0
Installed Missings ───────────────────── v0.4.4
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed InvertedIndices ────────────── v1.0.0
Installed Zlib_jll ───────────────────── v1.2.11+16
Installed RData ──────────────────────── v0.7.1
Installed IteratorInterfaceExtensions ── v1.0.0
Installed QuadGK ─────────────────────── v2.4.1
Installed FilePathsBase ──────────────── v0.7.0
Installed Conda ──────────────────────── v1.4.1
Installed PooledArrays ───────────────── v0.5.3
Installed DataAPI ────────────────────── v1.3.0
Installed XML2_jll ───────────────────── v2.9.10+2
Installed CodecZlib ──────────────────── v0.6.0
Installed TableTraits ────────────────── v1.0.0
Installed Mocking ────────────────────── v0.7.1
Installed StatsFuns ──────────────────── v0.9.5
Installed MacroTools ─────────────────── v0.5.5
Installed PDMats ─────────────────────── v0.9.12
Installed Parsers ────────────────────── v0.3.12
Installed URIParser ──────────────────── v0.4.1
Installed Compat ─────────────────────── v2.2.1
Installed SortingAlgorithms ──────────── v0.3.1
Installed DataValueInterfaces ────────── v1.0.0
Installed Libiconv_jll ───────────────── v1.16.0+6
Installed OrderedCollections ─────────── v1.3.1
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed PyPlot ─────────────────────── v2.9.0
Installed ExprTools ──────────────────── v0.1.2
Installed CSV ────────────────────────── v0.5.23
Installed RDatasets ──────────────────── v0.6.10
Updating `~/.julia/environments/v1.6/Project.toml`
[172a5912] + SOM v0.4.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[9e28174c] + BinDeps v1.0.1
[b99e7846] + BinaryProvider v0.5.10
[336ed68f] + CSV v0.5.23
[324d7699] + CategoricalArrays v0.7.7
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.10.9
[5ae59095] + Colors v0.12.4
[34da2185] + Compat v2.2.1
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] + Conda v1.4.1
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.19.4
[864edb3b] + DataStructures v0.17.20
[e2d170a0] + DataValueInterfaces v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.9
[e2ba6199] + ExprTools v0.1.2
[8f5d6c58] + EzXML v1.1.0
[5789e2e9] + FileIO v1.4.3
[48062228] + FilePathsBase v0.7.0
[53c48c17] + FixedPointNumbers v0.8.4
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[b964fa9f] + LaTeXStrings v1.2.0
[94ce4f54] + Libiconv_jll v1.16.0+6
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.4
[78c3b35d] + Mocking v0.7.1
[4536629a] + OpenBLAS_jll v0.3.10+0
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.9.12
[69de0a69] + Parsers v0.3.12
[2dfb63ee] + PooledArrays v0.5.3
[92933f4c] + ProgressMeter v1.4.0
[438e738f] + PyCall v1.92.1
[d330b81b] + PyPlot v2.9.0
[1fd47b50] + QuadGK v2.4.1
[df47a6cb] + RData v0.7.1
[ce6b1742] + RDatasets v0.6.10
[3cdcf5f2] + RecipesBase v1.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.1.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[172a5912] + SOM v0.4.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.8.0
[2913bbd2] + StatsBase v0.32.2
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[f269a46b] + TimeZones v1.4.0
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.1
[81def892] + VersionParsing v1.2.0
[ea10d353] + WeakRefStrings v0.6.2
[02c8fc9c] + XML2_jll v2.9.10+2
[83775a58] + Zlib_jll v1.2.11+16
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building SpecialFunctions → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3bdd374b6fd78faf0119b8c5d538788dbf910c6e/build.log`
Building TimeZones ───────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/2c48caca8f3912857973590a9757e1f86cbbff81/build.log`
Building Conda ───────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc/build.log`
Building PyCall ──────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b6dff5fa725eff4f775f472acd86756d6e31fb02/build.log`
Building CodecZlib ───────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/05916673a2627dd91b4969ff8ba6941bc85a960e/build.log`
Testing SOM
Status `/tmp/jl_w4S8QX/Project.toml`
[a93c6f00] DataFrames v0.19.4
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[92933f4c] ProgressMeter v1.4.0
[438e738f] PyCall v1.92.1
[d330b81b] PyPlot v2.9.0
[ce6b1742] RDatasets v0.6.10
[172a5912] SOM v0.4.1
[2913bbd2] StatsBase v0.32.2
[37e2e46d] LinearAlgebra
[44cfe95a] Pkg
[8dfed614] Test
Status `/tmp/jl_w4S8QX/Manifest.toml`
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[9e28174c] BinDeps v1.0.1
[b99e7846] BinaryProvider v0.5.10
[336ed68f] CSV v0.5.23
[324d7699] CategoricalArrays v0.7.7
[944b1d66] CodecZlib v0.6.0
[3da002f7] ColorTypes v0.10.9
[5ae59095] Colors v0.12.4
[34da2185] Compat v2.2.1
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.19.4
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.9
[e2ba6199] ExprTools v0.1.2
[8f5d6c58] EzXML v1.1.0
[5789e2e9] FileIO v1.4.3
[48062228] FilePathsBase v0.7.0
[53c48c17] FixedPointNumbers v0.8.4
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[b964fa9f] LaTeXStrings v1.2.0
[94ce4f54] Libiconv_jll v1.16.0+6
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.4
[78c3b35d] Mocking v0.7.1
[4536629a] OpenBLAS_jll v0.3.10+0
[bac558e1] OrderedCollections v1.3.1
[90014a1f] PDMats v0.9.12
[69de0a69] Parsers v0.3.12
[2dfb63ee] PooledArrays v0.5.3
[92933f4c] ProgressMeter v1.4.0
[438e738f] PyCall v1.92.1
[d330b81b] PyPlot v2.9.0
[1fd47b50] QuadGK v2.4.1
[df47a6cb] RData v0.7.1
[ce6b1742] RDatasets v0.6.10
[3cdcf5f2] RecipesBase v1.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.1.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[172a5912] SOM v0.4.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.8.0
[2913bbd2] StatsBase v0.32.2
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[f269a46b] TimeZones v1.4.0
[3bb67fe8] TranscodingStreams v0.9.5
[30578b45] URIParser v0.4.1
[81def892] VersionParsing v1.2.0
[ea10d353] WeakRefStrings v0.6.2
[02c8fc9c] XML2_jll v2.9.10+2
[83775a58] Zlib_jll v1.2.11+16
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
[ Info: Installing matplotlib via the Conda matplotlib package...
[ Info: Running `conda install -q -y matplotlib` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/pkgeval/.julia/conda/3
added / updated specs:
- matplotlib
The following packages will be downloaded:
package | build
---------------------------|-----------------
cycler-0.10.0 | py38_0 14 KB
dbus-1.13.16 | hb2f20db_0 501 KB
expat-2.2.9 | he6710b0_2 156 KB
fontconfig-2.13.0 | h9420a91_0 227 KB
freetype-2.10.2 | h5ab3b9f_0 608 KB
glib-2.65.0 | h3eb4bd4_0 2.9 MB
gst-plugins-base-1.14.0 | hbbd80ab_1 4.8 MB
gstreamer-1.14.0 | hb31296c_0 3.1 MB
icu-58.2 | he6710b0_3 10.5 MB
jpeg-9b | h024ee3a_2 214 KB
kiwisolver-1.2.0 | py38hfd86e86_0 84 KB
lcms2-2.11 | h396b838_0 307 KB
libpng-1.6.37 | hbc83047_0 278 KB
libtiff-4.1.0 | h2733197_1 449 KB
libuuid-1.0.3 | h1bed415_2 15 KB
libxcb-1.14 | h7b6447c_0 505 KB
libxml2-2.9.10 | he19cac6_1 1.2 MB
lz4-c-1.9.2 | he6710b0_1 190 KB
matplotlib-3.3.1 | 0 24 KB
matplotlib-base-3.3.1 | py38h817c723_0 5.1 MB
olefile-0.46 | py_0 33 KB
pcre-8.44 | he6710b0_0 212 KB
pillow-7.2.0 | py38hb39fc2d_0 617 KB
pyparsing-2.4.7 | py_0 65 KB
pyqt-5.9.2 | py38h05f1152_4 4.5 MB
python-dateutil-2.8.1 | py_0 215 KB
qt-5.9.7 | h5867ecd_1 68.5 MB
sip-4.19.13 | py38he6710b0_0 277 KB
tornado-6.0.4 | py38h7b6447c_1 603 KB
zstd-1.4.5 | h9ceee32_0 619 KB
------------------------------------------------------------
Total: 106.6 MB
The following NEW packages will be INSTALLED:
cycler pkgs/main/linux-64::cycler-0.10.0-py38_0
dbus pkgs/main/linux-64::dbus-1.13.16-hb2f20db_0
expat pkgs/main/linux-64::expat-2.2.9-he6710b0_2
fontconfig pkgs/main/linux-64::fontconfig-2.13.0-h9420a91_0
freetype pkgs/main/linux-64::freetype-2.10.2-h5ab3b9f_0
glib pkgs/main/linux-64::glib-2.65.0-h3eb4bd4_0
gst-plugins-base pkgs/main/linux-64::gst-plugins-base-1.14.0-hbbd80ab_1
gstreamer pkgs/main/linux-64::gstreamer-1.14.0-hb31296c_0
icu pkgs/main/linux-64::icu-58.2-he6710b0_3
jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2
kiwisolver pkgs/main/linux-64::kiwisolver-1.2.0-py38hfd86e86_0
lcms2 pkgs/main/linux-64::lcms2-2.11-h396b838_0
libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0
libtiff pkgs/main/linux-64::libtiff-4.1.0-h2733197_1
libuuid pkgs/main/linux-64::libuuid-1.0.3-h1bed415_2
libxcb pkgs/main/linux-64::libxcb-1.14-h7b6447c_0
libxml2 pkgs/main/linux-64::libxml2-2.9.10-he19cac6_1
lz4-c pkgs/main/linux-64::lz4-c-1.9.2-he6710b0_1
matplotlib pkgs/main/linux-64::matplotlib-3.3.1-0
matplotlib-base pkgs/main/linux-64::matplotlib-base-3.3.1-py38h817c723_0
olefile pkgs/main/noarch::olefile-0.46-py_0
pcre pkgs/main/linux-64::pcre-8.44-he6710b0_0
pillow pkgs/main/linux-64::pillow-7.2.0-py38hb39fc2d_0
pyparsing pkgs/main/noarch::pyparsing-2.4.7-py_0
pyqt pkgs/main/linux-64::pyqt-5.9.2-py38h05f1152_4
python-dateutil pkgs/main/noarch::python-dateutil-2.8.1-py_0
qt pkgs/main/linux-64::qt-5.9.7-h5867ecd_1
sip pkgs/main/linux-64::sip-4.19.13-py38he6710b0_0
tornado pkgs/main/linux-64::tornado-6.0.4-py38h7b6447c_1
zstd pkgs/main/linux-64::zstd-1.4.5-h9ceee32_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
0.592878 seconds (4.84 M allocations: 515.442 MiB, 23.43% gc time)
0.528161 seconds (4.84 M allocations: 515.442 MiB, 15.32% gc time)
0.056417 seconds (520.00 k allocations: 54.016 MiB, 13.21% gc time)
0.508081 seconds (4.84 M allocations: 515.442 MiB, 14.36% gc time)
0.535505 seconds (4.84 M allocations: 515.442 MiB, 13.92% gc time)
0.484076 seconds (4.84 M allocations: 515.442 MiB, 11.89% gc time)
0.556181 seconds (4.84 M allocations: 515.442 MiB, 12.02% gc time)
0.521822 seconds (4.84 M allocations: 515.442 MiB, 14.69% gc time)
0.523123 seconds (4.84 M allocations: 515.442 MiB, 14.13% gc time)
0.520394 seconds (4.84 M allocations: 515.442 MiB, 15.24% gc time)
0.547506 seconds (4.84 M allocations: 515.442 MiB, 17.41% gc time)
0.512242 seconds (4.84 M allocations: 515.442 MiB, 16.05% gc time)
0.575748 seconds (4.84 M allocations: 515.442 MiB, 19.18% gc time)
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-pkgeval'
DrawPopulation()
Writing plot to file density.png
0.495169 seconds (4.84 M allocations: 515.442 MiB, 18.28% gc time)
DrawPopulation()
Writing plot to file density.png
0.518809 seconds (4.84 M allocations: 515.442 MiB, 20.06% gc time)
Writing plot to file classes.png
0.560832 seconds (4.84 M allocations: 515.442 MiB, 18.14% gc time)
Writing plot to file classes.png
0.576431 seconds (4.84 M allocations: 515.442 MiB, 13.18% gc time)
Writing plot to file classesfile.svg
Testing SOM tests passed