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1.6.0-DEV-36effbe10a.log
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Julia Version 1.6.0-DEV.1117
Commit 36effbe10a (2020-10-02 17:38 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed StanDump ──────────────────── v0.2.0
Installed Parameters ────────────────── v0.12.1
Installed CategoricalArrays ─────────── v0.8.3
Installed DataStructures ────────────── v0.18.6
Installed DocStringExtensions ───────── v0.8.3
Installed StanDiagnose ──────────────── v2.1.0
Installed StanBase ──────────────────── v2.1.0
Installed DataFrames ────────────────── v0.21.7
Installed Adapt ─────────────────────── v2.3.0
Installed Tables ────────────────────── v1.1.0
Installed JSON ──────────────────────── v0.21.1
Installed InvertedIndices ───────────── v1.0.0
Installed ArgCheck ──────────────────── v2.1.0
Installed Reexport ──────────────────── v0.2.0
Installed Missings ──────────────────── v0.4.4
Installed PooledArrays ──────────────── v0.5.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed DataAPI ───────────────────── v1.3.0
Installed SentinelArrays ────────────── v1.2.16
Installed TableTraits ───────────────── v1.0.0
Installed StructTypes ───────────────── v1.1.0
Installed ElasticArrays ─────────────── v1.2.4
Installed Compat ────────────────────── v3.18.0
Installed StanSamples ───────────────── v0.1.0
Installed Parsers ───────────────────── v1.0.10
Installed DataValueInterfaces ───────── v1.0.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed UnPack ────────────────────── v1.0.2
Installed OrderedCollections ────────── v1.3.1
Installed Documenter ────────────────── v0.25.2
Installed CSV ───────────────────────── v0.7.7
Updating `~/.julia/environments/v1.6/Project.toml`
[fb13fc95] + StanDiagnose v2.1.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[79e6a3ab] + Adapt v2.3.0
[dce04be8] + ArgCheck v2.1.0
[336ed68f] + CSV v0.7.7
[324d7699] + CategoricalArrays v0.8.3
[34da2185] + Compat v3.18.0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.7
[864edb3b] + DataStructures v0.18.6
[e2d170a0] + DataValueInterfaces v1.0.0
[ffbed154] + DocStringExtensions v0.8.3
[e30172f5] + Documenter v0.25.2
[fdbdab4c] + ElasticArrays v1.2.4
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[e1d29d7a] + Missings v0.4.4
[bac558e1] + OrderedCollections v1.3.1
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.10
[2dfb63ee] + PooledArrays v0.5.3
[189a3867] + Reexport v0.2.0
[91c51154] + SentinelArrays v1.2.16
[a2af1166] + SortingAlgorithms v0.3.1
[d0ee94f6] + StanBase v2.1.0
[fb13fc95] + StanDiagnose v2.1.0
[9713c8f3] + StanDump v0.2.0
[52d0d7a9] + StanSamples v0.1.0
[856f2bd8] + StructTypes v1.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[3a884ed6] + UnPack v1.0.2
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing StanDiagnose
Status `/tmp/jl_FCiSRZ/Project.toml`
[336ed68f] CSV v0.7.7
[a93c6f00] DataFrames v0.21.7
[ffbed154] DocStringExtensions v0.8.3
[e30172f5] Documenter v0.25.2
[d0ee94f6] StanBase v2.1.0
[fb13fc95] StanDiagnose v2.1.0
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
[4ec0a83e] Unicode
Status `/tmp/jl_FCiSRZ/Manifest.toml`
[79e6a3ab] Adapt v2.3.0
[dce04be8] ArgCheck v2.1.0
[336ed68f] CSV v0.7.7
[324d7699] CategoricalArrays v0.8.3
[34da2185] Compat v3.18.0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.7
[864edb3b] DataStructures v0.18.6
[e2d170a0] DataValueInterfaces v1.0.0
[ffbed154] DocStringExtensions v0.8.3
[e30172f5] Documenter v0.25.2
[fdbdab4c] ElasticArrays v1.2.4
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[e1d29d7a] Missings v0.4.4
[bac558e1] OrderedCollections v1.3.1
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.10
[2dfb63ee] PooledArrays v0.5.3
[189a3867] Reexport v0.2.0
[91c51154] SentinelArrays v1.2.16
[a2af1166] SortingAlgorithms v0.3.1
[d0ee94f6] StanBase v2.1.0
[fb13fc95] StanDiagnose v2.1.0
[9713c8f3] StanDump v0.2.0
[52d0d7a9] StanSamples v0.1.0
[856f2bd8] StructTypes v1.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.1.0
[3a884ed6] UnPack v1.0.2
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/TSphq/src/StanBase.jl:73
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/TSphq/src/StanBase.jl:73
/tmp/jl_sBo3pO/bernoulli.stan updated.
Bernoulli diagnose: Error During Test at /home/pkgeval/.julia/packages/StanDiagnose/vsFfr/test/runtests.jl:23
Got exception outside of a @test
The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")()
@ StanBase ~/.julia/packages/StanBase/TSphq/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#500#501"{StanBase.var"#1#2"})(k::String)
@ Base ./env.jl:81
[3] access_env
@ ./env.jl:43 [inlined]
[4] get
@ ./env.jl:81 [inlined]
[5] get_cmdstan_home
@ ~/.julia/packages/StanBase/TSphq/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] DiagnoseModel(name::String, model::String, n_chains::Vector{Int64}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanDiagnose.Diagnose)
@ StanDiagnose ~/.julia/packages/StanDiagnose/vsFfr/src/stanmodel/DiagnoseModel.jl:54
[7] top-level scope
@ ~/.julia/packages/StanDiagnose/vsFfr/test/runtests.jl:25
[8] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[9] top-level scope
@ ~/.julia/packages/StanDiagnose/vsFfr/test/runtests.jl:25
[10] include(fname::String)
@ Base.MainInclude ./client.jl:444
[11] top-level scope
@ none:6
[12] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[13] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[14] _start()
@ Base ./client.jl:485
Test Summary: | Error Total
Bernoulli diagnose | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanDiagnose/vsFfr/test/runtests.jl:23
ERROR: Package StanDiagnose errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19