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1.6.0-DEV-4c805d2310.log
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Julia Version 1.6.0-DEV.913
Commit 4c805d2310 (2020-09-14 14:07 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed Reexport ───────────────────── v0.2.0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed ZygoteRules ────────────────── v0.2.0
Installed Rmath ──────────────────────── v0.6.1
Installed Compat ─────────────────────── v3.16.0
Installed QuadGK ─────────────────────── v2.4.1
Installed DataStructures ─────────────── v0.18.5
Installed AbstractGPs ────────────────── v0.2.9
Installed SpecialFunctions ───────────── v0.10.3
Installed SortingAlgorithms ──────────── v0.3.1
Installed RecipesBase ────────────────── v1.1.0
Installed PDMats ─────────────────────── v0.10.0
Installed Missings ───────────────────── v0.4.4
Installed OrderedCollections ─────────── v1.3.0
Installed DataAPI ────────────────────── v1.3.0
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed MuladdMacro ────────────────── v0.2.2
Installed StatsBase ──────────────────── v0.33.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Requires ───────────────────── v1.0.2
Installed MacroTools ─────────────────── v0.5.5
Installed FillArrays ─────────────────── v0.9.6
Installed KernelFunctions ────────────── v0.7.2
Installed ChainRulesCore ─────────────── v0.9.10
Installed Functors ───────────────────── v0.1.0
Installed Distances ──────────────────── v0.9.0
Installed StatsFuns ──────────────────── v0.9.5
Installed Distributions ──────────────── v0.23.11
Updating `~/.julia/environments/v1.6/Project.toml`
[99985d1d] + AbstractGPs v0.2.9
Updating `~/.julia/environments/v1.6/Manifest.toml`
[99985d1d] + AbstractGPs v0.2.9
[d360d2e6] + ChainRulesCore v0.9.10
[34da2185] + Compat v3.16.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.18.5
[b4f34e82] + Distances v0.9.0
[31c24e10] + Distributions v0.23.11
[1a297f60] + FillArrays v0.9.6
[d9f16b24] + Functors v0.1.0
[ec8451be] + KernelFunctions v0.7.2
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.4
[46d2c3a1] + MuladdMacro v0.2.2
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.0
[90014a1f] + PDMats v0.10.0
[1fd47b50] + QuadGK v2.4.1
[3cdcf5f2] + RecipesBase v1.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.2
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[2913bbd2] + StatsBase v0.33.1
[4c63d2b9] + StatsFuns v0.9.5
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing AbstractGPs
Status `/tmp/jl_POvf7q/Project.toml`
[99985d1d] AbstractGPs v0.2.9
[d360d2e6] ChainRulesCore v0.9.10
[31c24e10] Distributions v0.23.11
[e30172f5] Documenter v0.25.2
[26cc04aa] FiniteDifferences v0.10.8
[91a5bcdd] Plots v1.6.4
[fce5fe82] Turing v0.14.2
[e88e6eb3] Zygote v0.5.6
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_POvf7q/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[99985d1d] AbstractGPs v0.2.9
[80f14c24] AbstractMCMC v1.0.1
[1520ce14] AbstractTrees v0.3.3
[79e6a3ab] Adapt v2.0.2
[0bf59076] AdvancedHMC v0.2.25
[5b7e9947] AdvancedMH v0.5.1
[b5ca4192] AdvancedVI v0.1.0
[dce04be8] ArgCheck v2.1.0
[4fba245c] ArrayInterface v2.12.0
[4c555306] ArrayLayouts v0.4.7
[39de3d68] AxisArrays v0.4.3
[6e4b80f9] BenchmarkTools v0.5.0
[76274a88] Bijectors v0.8.4
[b99e7846] BinaryProvider v0.5.10
[6e34b625] Bzip2_jll v1.0.6+4
[082447d4] ChainRules v0.7.18
[d360d2e6] ChainRulesCore v0.9.10
[35d6a980] ColorSchemes v3.9.0
[3da002f7] ColorTypes v0.10.9
[5ae59095] Colors v0.12.4
[861a8166] Combinatorics v1.0.2
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.16.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[d38c429a] Contour v0.5.5
[adafc99b] CpuId v0.2.2
[a8cc5b0e] Crayons v4.0.4
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.18.5
[e2d170a0] DataValueInterfaces v1.0.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.9.0
[31c24e10] Distributions v0.23.11
[ced4e74d] DistributionsAD v0.6.9
[ffbed154] DocStringExtensions v0.8.3
[e30172f5] Documenter v0.25.2
[366bfd00] DynamicPPL v0.9.1
[5ae413db] EarCut_jll v2.1.5+0
[da5c29d0] EllipsisNotation v0.4.0
[cad2338a] EllipticalSliceSampling v0.2.2
[c87230d0] FFMPEG v0.4.0
[b22a6f82] FFMPEG_jll v4.3.1+2
[1a297f60] FillArrays v0.9.6
[26cc04aa] FiniteDifferences v0.10.8
[53c48c17] FixedPointNumbers v0.8.4
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.12
[d7e528f0] FreeType2_jll v2.10.1+4
[559328eb] FriBidi_jll v1.0.5+5
[d9f16b24] Functors v0.1.0
[28b8d3ca] GR v0.52.0
[5c1252a2] GeometryBasics v0.3.1
[4d00f742] GeometryTypes v0.8.3
[cd3eb016] HTTP v0.8.17
[7869d1d1] IRTools v0.4.1
[83e8ac13] IniFile v0.5.0
[505f98c9] InplaceOps v0.3.0
[8197267c] IntervalSets v0.5.1
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[ec8451be] KernelFunctions v0.7.2
[c1c5ebd0] LAME_jll v3.100.0+2
[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[dd192d2f] LibVPX_jll v1.9.0+0
[6f1fad26] Libtask v0.4.1
[6fdf6af0] LogDensityProblems v0.10.3
[e6f89c97] LoggingExtras v0.4.2
[bdcacae8] LoopVectorization v0.8.26
[c7f686f2] MCMCChains v4.1.0
[1914dd2f] MacroTools v0.5.5
[dbb5928d] MappedArrays v0.2.2
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.8+0
[442fdcdd] Measures v0.3.1
[e1d29d7a] Missings v0.4.4
[46d2c3a1] MuladdMacro v0.2.2
[872c559c] NNlib v0.7.4
[77ba4419] NaNMath v0.3.4
[86f7a689] NamedArrays v0.9.4
[c020b1a1] NaturalSort v1.0.0
[6fe1bfb0] OffsetArrays v1.2.0
[e7412a2a] Ogg_jll v1.3.4+1
[458c3c95] OpenSSL_jll v1.1.1+5
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[91d4177d] Opus_jll v1.3.1+2
[bac558e1] OrderedCollections v1.3.0
[90014a1f] PDMats v0.10.0
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.10
[ccf2f8ad] PlotThemes v2.0.0
[995b91a9] PlotUtils v1.0.6
[91a5bcdd] Plots v1.6.4
[08abe8d2] PrettyTables v0.9.1
[33c8b6b6] ProgressLogging v0.1.3
[92933f4c] ProgressMeter v1.3.3
[1fd47b50] QuadGK v2.4.1
[b3c3ace0] RangeArrays v0.3.2
[3cdcf5f2] RecipesBase v1.1.0
[01d81517] RecipesPipeline v0.1.13
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.2
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[f2b01f46] Roots v1.0.5
[21efa798] SIMDPirates v0.8.25
[476501e8] SLEEFPirates v0.5.5
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.5
[09ab397b] StructArrays v0.4.4
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.5
[5d786b92] TerminalLoggers v0.1.2
[9f7883ad] Tracker v0.2.11
[84d833dd] TransformVariables v0.3.10
[fce5fe82] Turing v0.14.2
[3a884ed6] UnPack v1.0.2
[3d5dd08c] VectorizationBase v0.12.33
[83775a58] Zlib_jll v1.2.11+16
[e88e6eb3] Zygote v0.5.6
[700de1a5] ZygoteRules v0.2.0
[0ac62f75] libass_jll v0.14.0+3
[f638f0a6] libfdk_aac_jll v0.1.6+3
[f27f6e37] libvorbis_jll v1.3.6+5
[1270edf5] x264_jll v2020.7.14+1
[dfaa095f] x265_jll v3.0.0+2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
tr_At_A: Error During Test at /home/pkgeval/.julia/packages/AbstractGPs/P96Xc/test/util/common_covmat_ops.jl:79
Got exception outside of a @test
MethodError: no method matching Core.Compiler.IRCode(::Vector{Any}, ::Vector{Any}, ::Vector{Int32}, ::Vector{UInt8}, ::Core.Compiler.CFG, ::Vector{Core.LineInfoNode}, ::Vector{Any}, ::Vector{Any}, ::Vector{Any})
Stacktrace:
[1] Core.Compiler.IRCode(ir::IRTools.Inner.IR)
@ IRTools.Inner.Wrap ~/.julia/packages/IRTools/GVPoj/src/ir/wrap.jl:55
[2] update!(ci::Core.CodeInfo, ir::IRTools.Inner.IR)
@ IRTools.Inner ~/.julia/packages/IRTools/GVPoj/src/reflection/utils.jl:143
[3] #s2778#1234
@ ~/.julia/packages/Zygote/Xgcgs/src/compiler/interface2.jl:34 [inlined]
[4] #s2778#1234(::Any, ctx::Any, f::Any, args::Any)
@ Zygote ./none:0
[5] (::Core.GeneratedFunctionStub)(::Any, ::Vararg{Any, N} where N)
@ Core ./boot.jl:556
[6] _pullback(f::Function, args::Matrix{Float64})
@ Zygote ~/.julia/packages/Zygote/Xgcgs/src/compiler/interface.jl:38
[7] pullback(f::Function, args::Matrix{Float64})
@ Zygote ~/.julia/packages/Zygote/Xgcgs/src/compiler/interface.jl:44
[8] adjoint_test(f::Function, ȳ::Float64, x::Matrix{Float64}; rtol::Float64, atol::Float64, fdm::FiniteDifferences.Central{UnitRange{Int64}, Vector{Float64}}, print_results::Bool)
@ Main ~/.julia/packages/AbstractGPs/P96Xc/test/test_util.jl:60
[9] adjoint_test(f::Function, ȳ::Float64, x::Matrix{Float64})
@ Main ~/.julia/packages/AbstractGPs/P96Xc/test/test_util.jl:60
[10] top-level scope
@ ~/.julia/packages/AbstractGPs/P96Xc/test/util/common_covmat_ops.jl:84
[11] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[12] top-level scope
@ ~/.julia/packages/AbstractGPs/P96Xc/test/util/common_covmat_ops.jl:80
[13] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[14] top-level scope
@ ~/.julia/packages/AbstractGPs/P96Xc/test/util/common_covmat_ops.jl:2
[15] include(fname::String)
@ Base.MainInclude ./client.jl:444
[16] top-level scope
@ ~/.julia/packages/AbstractGPs/P96Xc/test/runtests.jl:26
[17] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[18] top-level scope
@ ~/.julia/packages/AbstractGPs/P96Xc/test/runtests.jl:26
[19] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[20] top-level scope
@ ~/.julia/packages/AbstractGPs/P96Xc/test/runtests.jl:25
[21] include(fname::String)
@ Base.MainInclude ./client.jl:444
[22] top-level scope
@ none:6
[23] eval(m::Module, e::Any)
@ Core ./boot.jl:345
[24] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[25] _start()
@ Base ./client.jl:485
[ Info: Ran util tests
[ Info: Ran abstract_gp tests
[ Info: Ran gp tests
[ Info: Ran posterior_gp tests
[ Info: Ran latent_gp tests
Sampling 0%%| | ETA: N/A
Sampling 20%%|████████▍ | ETA: 0:00:18
Sampling 40%%|████████████████▊ | ETA: 0:00:07
Sampling 60%%|█████████████████████████▎ | ETA: 0:00:03
Sampling 80%%|█████████████████████████████████▋ | ETA: 0:00:01
Sampling 100%%|██████████████████████████████████████████| Time: 0:00:04
Sampling 100%%|██████████████████████████████████████████| Time: 0:00:07
Sampling 0%%| | ETA: N/A
Sampling 20%%|████████▍ | ETA: 0:00:01
Sampling 40%%|████████████████▊ | ETA: 0:00:01
Sampling 60%%|█████████████████████████▎ | ETA: 0:00:00
Sampling 80%%|█████████████████████████████████▋ | ETA: 0:00:00
Sampling 100%%|██████████████████████████████████████████| Time: 0:00:00
Sampling 100%%|██████████████████████████████████████████| Time: 0:00:00
[ Info: Ran Turing tests
[ Info: SetupBuildDirectory: setting up build directory.
[ Info: Doctest: running doctests.
[ Info: Skipped ExpandTemplates step (doctest only).
[ Info: Skipped CrossReferences step (doctest only).
[ Info: Skipped CheckDocument step (doctest only).
[ Info: Skipped Populate step (doctest only).
[ Info: Skipped RenderDocument step (doctest only).
Test Summary: | Pass Error Total
AbstractGPs | 201 1 202
util | 39 1 40
common_covmat_ops | 33 1 34
update_chol | 2 2
tr_At_A | 1 1 2
plotting | 6 6
abstract_gp | 36 36
gp | 37 37
posterior_gp | 79 79
latent_gp | 7 7
turing compat | 2 2
doctests | 1 1
ERROR: LoadError: Some tests did not pass: 201 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/AbstractGPs/P96Xc/test/runtests.jl:24
ERROR: Package AbstractGPs errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String, N} where N)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1580
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:328
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:315
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19