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1.6.0-DEV-4c805d2310.log
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1.6.0-DEV-4c805d2310.log
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Julia Version 1.6.0-DEV.913
Commit 4c805d2310 (2020-09-14 14:07 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed Format ────────────── v0.8.0
Installed AbstractTrees ─────── v0.3.3
Installed BioSymbols ────────── v3.1.0
Installed Twiddle ───────────── v1.1.2
Installed Bio ───────────────── v1.0.1
Installed GeneticVariation ──── v0.4.0
Installed GenomicFeatures ───── v1.0.4
Installed BioSequences ──────── v1.1.0
Installed MbedTLS_jll ───────── v2.16.8+0
Installed Compat ────────────── v2.2.1
Installed FixedPointNumbers ─── v0.7.1
Installed Gumbo ─────────────── v0.8.0
Installed IndexableBitVectors ─ v1.0.0
Installed IterTools ─────────── v1.3.0
Installed BinaryProvider ────── v0.5.10
Installed DataStructures ────── v0.17.20
Installed JSON ──────────────── v0.21.1
Installed BioCore ───────────── v2.0.5
Installed BufferedStreams ───── v1.0.0
Installed RecipesBase ───────── v0.7.0
Installed CodecZlib ─────────── v0.6.0
Installed ColorTypes ────────── v0.9.1
Installed OrderedCollections ── v1.3.0
Installed BioTools ──────────── v1.0.0
Installed IntervalTrees ─────── v1.0.0
Installed TranscodingStreams ── v0.9.5
Installed BioAlignments ─────── v1.0.1
Installed IniFile ───────────── v0.5.0
Installed EzXML ─────────────── v0.9.5
Installed Libz ──────────────── v1.0.1
Installed URIParser ─────────── v0.4.1
Installed Gumbo_jll ─────────── v0.10.1+1
Installed XMLDict ───────────── v0.4.1
Installed HTTP ──────────────── v0.8.17
Installed Parsers ───────────── v1.0.10
Installed MbedTLS ───────────── v1.0.2
Installed Polynomials ───────── v0.6.1
Installed YAML ──────────────── v0.4.2
Installed BGZFStreams ───────── v0.3.0
Installed Automa ────────────── v0.7.0
Installed BioStructures ─────── v0.4.0
Installed BioServices ───────── v0.3.2
Installed Combinatorics ─────── v0.7.0
Updating `~/.julia/environments/v1.6/Project.toml`
[3637df68] + Bio v1.0.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[1520ce14] + AbstractTrees v0.3.3
[67c07d97] + Automa v0.7.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.10
[3637df68] + Bio v1.0.1
[00701ae9] + BioAlignments v1.0.1
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[a0d4ced5] + BioServices v0.3.2
[de9282ab] + BioStructures v0.4.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.9.1
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.1
[864edb3b] + DataStructures v0.17.20
[8f5d6c58] + EzXML v0.9.5
[53c48c17] + FixedPointNumbers v0.7.1
[1fa38f19] + Format v0.8.0
[9bc6ac9d] + GeneticVariation v0.4.0
[899a7d2d] + GenomicFeatures v1.0.4
[708ec375] + Gumbo v0.8.0
[528830af] + Gumbo_jll v0.10.1+1
[cd3eb016] + HTTP v0.8.17
[1cb3b9ac] + IndexableBitVectors v1.0.0
[83e8ac13] + IniFile v0.5.0
[524e6230] + IntervalTrees v1.0.0
[c8e1da08] + IterTools v1.3.0
[682c06a0] + JSON v0.21.1
[2ec943e9] + Libz v1.0.1
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.8+0
[bac558e1] + OrderedCollections v1.3.0
[69de0a69] + Parsers v1.0.10
[f27b6e38] + Polynomials v0.6.1
[3cdcf5f2] + RecipesBase v0.7.0
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.2
[30578b45] + URIParser v0.4.1
[228000da] + XMLDict v0.4.1
[ddb6d928] + YAML v0.4.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Testing Bio
Status `/tmp/jl_hLu5aV/Project.toml`
[3637df68] Bio v1.0.1
[00701ae9] BioAlignments v1.0.1
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[a0d4ced5] BioServices v0.3.2
[de9282ab] BioStructures v0.4.0
[fa51a905] BioTools v1.0.0
[9bc6ac9d] GeneticVariation v0.4.0
[899a7d2d] GenomicFeatures v1.0.4
[44cfe95a] Pkg
[8dfed614] Test
Status `/tmp/jl_hLu5aV/Manifest.toml`
[1520ce14] AbstractTrees v0.3.3
[67c07d97] Automa v0.7.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.10
[3637df68] Bio v1.0.1
[00701ae9] BioAlignments v1.0.1
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[a0d4ced5] BioServices v0.3.2
[de9282ab] BioStructures v0.4.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[3da002f7] ColorTypes v0.9.1
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.1
[864edb3b] DataStructures v0.17.20
[8f5d6c58] EzXML v0.9.5
[53c48c17] FixedPointNumbers v0.7.1
[1fa38f19] Format v0.8.0
[9bc6ac9d] GeneticVariation v0.4.0
[899a7d2d] GenomicFeatures v1.0.4
[708ec375] Gumbo v0.8.0
[528830af] Gumbo_jll v0.10.1+1
[cd3eb016] HTTP v0.8.17
[1cb3b9ac] IndexableBitVectors v1.0.0
[83e8ac13] IniFile v0.5.0
[524e6230] IntervalTrees v1.0.0
[c8e1da08] IterTools v1.3.0
[682c06a0] JSON v0.21.1
[2ec943e9] Libz v1.0.1
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.8+0
[bac558e1] OrderedCollections v1.3.0
[69de0a69] Parsers v1.0.10
[f27b6e38] Polynomials v0.6.1
[3cdcf5f2] RecipesBase v0.7.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.2
[30578b45] URIParser v0.4.1
[228000da] XMLDict v0.4.1
[ddb6d928] YAML v0.4.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
ERROR: LoadError: syntax: missing separator in array expression
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/Bio/sLeRG/test/runtests.jl:9
[2] include(fname::String)
@ Base.MainInclude ./client.jl:444
[3] top-level scope
@ none:6
in expression starting at /home/pkgeval/.julia/packages/Bio/sLeRG/test/runtests.jl:9
ERROR: Package Bio errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String, N} where N)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1580
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:328
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:315
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19