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1.6.0-DEV-4c805d2310.log
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Julia Version 1.6.0-DEV.913
Commit 4c805d2310 (2020-09-14 14:07 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed Zlib_jll ──────────────────── v1.2.11+16
Installed ZygoteRules ───────────────── v0.2.0
Installed CpuId ─────────────────────── v0.2.2
Installed FunctionWrappers ──────────── v1.1.1
Installed Tables ────────────────────── v1.0.5
Installed ODE ───────────────────────── v2.8.0
Installed DataStructures ────────────── v0.18.5
Installed TimeZones ─────────────────── v1.3.2
Installed Reexport ──────────────────── v0.2.0
Installed Compat ────────────────────── v3.16.0
Installed TableTraits ───────────────── v1.0.0
Installed Roots ─────────────────────── v1.0.5
Installed DataValueInterfaces ───────── v1.0.0
Installed OrderedCollections ────────── v1.3.0
Installed ExprTools ─────────────────── v0.1.2
Installed StaticArrays ──────────────── v0.12.4
Installed Libiconv_jll ──────────────── v1.16.0+6
Installed DataAPI ───────────────────── v1.3.0
Installed RecipesBase ───────────────── v1.1.0
Installed ArrayInterface ────────────── v2.12.0
Installed LabelledArrays ────────────── v1.3.0
Installed OffsetArrays ──────────────── v1.2.0
Installed MuladdMacro ───────────────── v0.2.2
Installed Parameters ────────────────── v0.12.1
Installed MacroTools ────────────────── v0.5.5
Installed DocStringExtensions ───────── v0.8.3
Installed XML2_jll ──────────────────── v2.9.10+2
Installed EzXML ─────────────────────── v1.1.0
Installed ChainRulesCore ────────────── v0.9.10
Installed SIMDPirates ───────────────── v0.8.25
Installed VectorizationBase ─────────── v0.12.33
Installed Intervals ─────────────────── v1.4.2
Installed DiffEqBase ────────────────── v6.47.0
Installed LoopVectorization ─────────── v0.8.26
Installed Polynomials ───────────────── v0.8.0
Installed IterativeSolvers ──────────── v0.8.4
Installed Requires ──────────────────── v1.0.2
Installed TreeViews ─────────────────── v0.3.0
Installed SLEEFPirates ──────────────── v0.5.5
Installed Mocking ───────────────────── v0.7.1
Installed UnPack ────────────────────── v1.0.2
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed RecursiveArrayTools ───────── v2.7.0
Installed RecursiveFactorization ────── v0.1.4
Updating `~/.julia/environments/v1.6/Project.toml`
[c030b06c] + ODE v2.8.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[4fba245c] + ArrayInterface v2.12.0
[d360d2e6] + ChainRulesCore v0.9.10
[34da2185] + Compat v3.16.0
[adafc99b] + CpuId v0.2.2
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.18.5
[e2d170a0] + DataValueInterfaces v1.0.0
[2b5f629d] + DiffEqBase v6.47.0
[ffbed154] + DocStringExtensions v0.8.3
[e2ba6199] + ExprTools v0.1.2
[8f5d6c58] + EzXML v1.1.0
[069b7b12] + FunctionWrappers v1.1.1
[d8418881] + Intervals v1.4.2
[42fd0dbc] + IterativeSolvers v0.8.4
[82899510] + IteratorInterfaceExtensions v1.0.0
[2ee39098] + LabelledArrays v1.3.0
[94ce4f54] + Libiconv_jll v1.16.0+6
[bdcacae8] + LoopVectorization v0.8.26
[1914dd2f] + MacroTools v0.5.5
[78c3b35d] + Mocking v0.7.1
[46d2c3a1] + MuladdMacro v0.2.2
[c030b06c] + ODE v2.8.0
[6fe1bfb0] + OffsetArrays v1.2.0
[bac558e1] + OrderedCollections v1.3.0
[d96e819e] + Parameters v0.12.1
[f27b6e38] + Polynomials v0.8.0
[3cdcf5f2] + RecipesBase v1.1.0
[731186ca] + RecursiveArrayTools v2.7.0
[f2c3362d] + RecursiveFactorization v0.1.4
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.2
[f2b01f46] + Roots v1.0.5
[21efa798] + SIMDPirates v0.8.25
[476501e8] + SLEEFPirates v0.5.5
[90137ffa] + StaticArrays v0.12.4
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[f269a46b] + TimeZones v1.3.2
[a2a6695c] + TreeViews v0.3.0
[3a884ed6] + UnPack v1.0.2
[3d5dd08c] + VectorizationBase v0.12.33
[02c8fc9c] + XML2_jll v2.9.10+2
[83775a58] + Zlib_jll v1.2.11+16
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building TimeZones ───→ `~/.julia/packages/TimeZones/v0mfN/deps/build.log`
Building SLEEFPirates → `~/.julia/packages/SLEEFPirates/jGsib/deps/build.log`
Testing ODE
┌ Error: Pkg.Resolve.ResolverError("Unsatisfiable requirements detected for package Catlab [134e5e36]:\n Catlab [134e5e36] log:\n ├─possible versions are: 0.2.1-0.8.0 or uninstalled\n ├─restricted by compatibility requirements with Requires [ae029012] to versions: [0.2.1, 0.5.3-0.8.0] or uninstalled\n │ └─Requires [ae029012] log:\n │ ├─possible versions are: 0.5.0-1.0.2 or uninstalled\n │ └─restricted to versions 1.0.2 by an explicit requirement, leaving only versions 1.0.2\n ├─restricted by compatibility requirements with Catalyst [479239e8] to versions: 0.7.3-0.7.4\n │ └─Catalyst [479239e8] log:\n │ ├─possible versions are: 5.0.0-5.0.6 or uninstalled\n │ └─restricted by compatibility requirements with DiffEqProblemLibrary [a077e3f3] to versions: 5.0.5-5.0.6\n │ └─DiffEqProblemLibrary [a077e3f3] log:\n │ ├─possible versions are: 3.0.0-4.9.1 or uninstalled\n │ ├─restricted to versions * by an explicit requirement, leaving only versions 3.0.0-4.9.1\n │ ├─restricted by compatibility requirements with DiffEqBase [2b5f629d] to versions: 4.2.0-4.9.1 or uninstalled, leaving only versions: 4.2.0-4.9.1\n │ │ └─DiffEqBase [2b5f629d] log:\n │ │ ├─possible versions are: 3.13.2-6.47.0 or uninstalled\n │ │ └─restricted to versions 6.47.0 by an explicit requirement, leaving only versions 6.47.0\n │ └─restricted by compatibility requirements with DiffEqBiological [eb300fae] to versions: 4.9.0-4.9.1 or uninstalled, leaving only versions: 4.9.0-4.9.1\n │ └─DiffEqBiological [eb300fae] log:\n │ ├─possible versions are: 3.0.0-4.3.0 or uninstalled\n │ ├─restricted by compatibility requirements with DiffEqBase [2b5f629d] to versions: 3.10.0-4.3.0 or uninstalled\n │ │ └─DiffEqBase [2b5f629d] log: see above\n │ ├─restricted by compatibility requirements with RecipesBase [3cdcf5f2] to versions: [3.0.0-3.8.2, 4.3.0] or uninstalled, leaving only versions: 4.3.0 or uninstalled\n │ │ └─RecipesBase [3cdcf5f2] log:\n │ │ ├─possible versions are: 0.4.0-1.1.0 or uninstalled\n │ │ └─restricted to versions 1.1.0 by an explicit requirement, leaving only versions 1.1.0\n │ └─restricted by compatibility requirements with DataStructures [864edb3b] to versions: 4.0.0-4.0.2 or uninstalled, leaving only versions: uninstalled\n │ └─DataStructures [864edb3b] log:\n │ ├─possible versions are: 0.9.0-0.18.5 or uninstalled\n │ └─restricted to versions 0.18.5 by an explicit requirement, leaving only versions 0.18.5\n └─restricted by compatibility requirements with MetaGraphs [626554b9] to versions: uninstalled — no versions left\n └─MetaGraphs [626554b9] log:\n ├─possible versions are: 0.5.0-0.6.5 or uninstalled\n └─restricted by compatibility requirements with JLD2 [033835bb] to versions: uninstalled\n └─JLD2 [033835bb] log:\n ├─possible versions are: 0.1.0-0.2.0 or uninstalled\n └─restricted by compatibility requirements with DataStructures [864edb3b] to versions: 0.2.0 or uninstalled\n └─DataStructures [864edb3b] log: see above", nothing)
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1428
Status `/tmp/jl_ijcpKu/Project.toml`
[34da2185] Compat v3.16.0
[2b5f629d] DiffEqBase v6.47.0
[a077e3f3] DiffEqProblemLibrary v4.8.1
[c030b06c] ODE v2.8.0
[f27b6e38] Polynomials v0.8.0
[189a3867] Reexport v0.2.0
[37e2e46d] LinearAlgebra
[8dfed614] Test
Status `/tmp/jl_ijcpKu/Manifest.toml`
[79e6a3ab] Adapt v2.0.2
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.12.0
[4c555306] ArrayLayouts v0.4.7
[aae01518] BandedMatrices v0.15.20
[b99e7846] BinaryProvider v0.5.10
[8e7c35d0] BlockArrays v0.12.12
[ffab5731] BlockBandedMatrices v0.9.2
[a603d957] CanonicalTraits v0.2.2
[d360d2e6] ChainRulesCore v0.9.10
[861a8166] Combinatorics v1.0.2
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.16.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[187b0558] ConstructionBase v1.0.0
[adafc99b] CpuId v0.2.2
[a8cc5b0e] Crayons v4.0.4
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.18.5
[e2d170a0] DataValueInterfaces v1.0.0
[2b5f629d] DiffEqBase v6.47.0
[eb300fae] DiffEqBiological v4.0.2
[c894b116] DiffEqJump v6.10.1
[9fdde737] DiffEqOperators v4.14.0
[a077e3f3] DiffEqProblemLibrary v4.8.1
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[ffbed154] DocStringExtensions v0.8.3
[497a8b3b] DoubleFloats v1.1.13
[7c1d4256] DynamicPolynomials v0.3.3
[fdbdab4c] ElasticArrays v1.2.4
[e2ba6199] ExprTools v0.1.2
[8f5d6c58] EzXML v1.1.0
[1a297f60] FillArrays v0.9.6
[3dd14ad9] FixedPolynomials v0.4.0
[59287772] Formatting v0.4.1
[f6369f11] ForwardDiff v0.10.12
[069b7b12] FunctionWrappers v1.1.1
[6b9d7cbe] GeneralizedGenerated v0.2.7
[01680d73] GenericSVD v0.3.0
[c145ed77] GenericSchur v0.4.0
[f213a82b] HomotopyContinuation v1.4.4
[d25df0c9] Inflate v0.1.2
[d8418881] Intervals v1.4.2
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[b14d175d] JuliaVariables v0.2.3
[b964fa9f] LaTeXStrings v1.1.0
[2ee39098] LabelledArrays v1.3.0
[23fbe1c1] Latexify v0.12.3
[5078a376] LazyArrays v0.18.1
[d7e5e226] LazyBandedMatrices v0.3.5
[94ce4f54] Libiconv_jll v1.16.0+6
[093fc24a] LightGraphs v1.3.0
[bdcacae8] LoopVectorization v0.8.26
[d8e11817] MLStyle v0.4.6
[1914dd2f] MacroTools v0.5.5
[a3b82374] MatrixFactorizations v0.6.0
[291d046c] MixedSubdivisions v1.0.0
[78c3b35d] Mocking v0.7.1
[961ee093] ModelingToolkit v3.6.1
[46d2c3a1] MuladdMacro v0.2.2
[102ac46a] MultivariatePolynomials v0.3.2
[872c559c] NNlib v0.7.4
[77ba4419] NaNMath v0.3.4
[71a1bf82] NameResolution v0.1.5
[c030b06c] ODE v2.8.0
[6fe1bfb0] OffsetArrays v1.2.0
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.0
[d96e819e] Parameters v0.12.1
[e409e4f3] PoissonRandom v0.4.0
[f27b6e38] Polynomials v0.8.0
[8162dcfd] PrettyPrint v0.2.0
[08abe8d2] PrettyTables v0.9.1
[92933f4c] ProgressMeter v1.3.3
[01f381cc] ProjectiveVectors v1.1.2
[be4d8f0f] Quadmath v0.5.2
[e6cf234a] RandomNumbers v1.4.0
[3cdcf5f2] RecipesBase v0.7.0
[731186ca] RecursiveArrayTools v2.7.0
[f2c3362d] RecursiveFactorization v0.1.4
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v1.0.5
[21efa798] SIMDPirates v0.8.25
[476501e8] SLEEFPirates v0.5.5
[1bc83da4] SafeTestsets v0.0.1
[699a6c99] SimpleTraits v0.9.3
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[62e018b1] StaticPolynomials v1.3.3
[123dc426] SymEngine v0.7.1
[d1185830] SymbolicUtils v0.3.3
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.5
[f269a46b] TimeZones v1.3.2
[a759f4b9] TimerOutputs v0.5.6
[a2a6695c] TreeViews v0.3.0
[3a884ed6] UnPack v1.0.2
[1986cc42] Unitful v1.4.0
[3d5dd08c] VectorizationBase v0.12.33
[02c8fc9c] XML2_jll v2.9.10+2
[83775a58] Zlib_jll v1.2.11+16
[700de1a5] ZygoteRules v0.2.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
┌ Warning: `@get!(dict, key, default)` at /home/pkgeval/.julia/packages/Requires/9Jse8/src/require.jl:11 is deprecated, use `get!(()->default, dict, key)` instead.
└ @ Base deprecated.jl:204
using ode1
using ode2_midpoint
using ode2_heun
using ode4
using ode4ms
using ode5ms
┌ Warning: Use of `Poly` from v1.0 forward will require `using Polynomials.PolyCompat`
│ caller = fromroots(P::Type{Polynomials.PolyCompat.Poly}, r::Vector{Float64}; var::Symbol) at Poly.jl:64
└ @ Polynomials.PolyCompat ~/.julia/packages/Polynomials/ghqdF/src/polynomials/Poly.jl:64
┌ Warning: Use of `Poly` from v1.0 forward will require `using Polynomials.PolyCompat`
│ caller = integrate(p::Polynomials.PolyCompat.Poly{Float64}, k::Int64) at Poly.jl:89
└ @ Polynomials.PolyCompat ~/.julia/packages/Polynomials/ghqdF/src/polynomials/Poly.jl:89
using ode23
using ode45_dp
using ode45_fe
using ode78
using ode4s_s
using ode4s_kr
using ode23s
ROBER test case
Testing interface for scalar-like state... ┌ Warning: Assignment to `t` in soft scope is ambiguous because a global variable by the same name exists: `t` will be treated as a new local. Disambiguate by using `local t` to suppress this warning or `global t` to assign to the existing global variable.
└ @ ~/.julia/packages/ODE/i9tA3/test/interface-tests.jl:71
ok.
┌ Warning: `@get!(dict, key, default)` at /home/pkgeval/.julia/packages/SymbolicUtils/ANVDR/src/rule_dsl.jl:296 is deprecated, use `get!(()->default, dict, key)` instead.
└ @ Base deprecated.jl:204
┌ Warning: The save_idxs argument is ignored by ode23().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The progress argument is ignored by ode23().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The beta1 argument is ignored by ode23().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The gamma argument is ignored by ode23().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: Please see http://docs.juliadiffeq.org/dev/basics/compatibility_chart.html
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:98
┌ Warning: The save_idxs argument is ignored by ode45().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The progress argument is ignored by ode45().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The beta1 argument is ignored by ode45().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The gamma argument is ignored by ode45().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: Please see http://docs.juliadiffeq.org/dev/basics/compatibility_chart.html
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:98
┌ Warning: The save_idxs argument is ignored by ode78().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The progress argument is ignored by ode78().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The beta1 argument is ignored by ode78().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The gamma argument is ignored by ode78().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: Please see http://docs.juliadiffeq.org/dev/basics/compatibility_chart.html
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:98
┌ Warning: The save_idxs argument is ignored by ode4().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The progress argument is ignored by ode4().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The beta1 argument is ignored by ode4().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The gamma argument is ignored by ode4().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: Please see http://docs.juliadiffeq.org/dev/basics/compatibility_chart.html
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:98
┌ Warning: The save_idxs argument is ignored by ode4ms().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The progress argument is ignored by ode4ms().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The beta1 argument is ignored by ode4ms().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The gamma argument is ignored by ode4ms().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: Please see http://docs.juliadiffeq.org/dev/basics/compatibility_chart.html
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:98
┌ Warning: The save_idxs argument is ignored by ode4s().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The progress argument is ignored by ode4s().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The beta1 argument is ignored by ode4s().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: The gamma argument is ignored by ode4s().
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:85
┌ Warning: Please see http://docs.juliadiffeq.org/dev/basics/compatibility_chart.html
└ @ DiffEqBase ~/.julia/packages/DiffEqBase/kRzKx/src/utils.jl:98
All looks OK
Testing ODE tests passed