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1.6.0-DEV-4c805d2310.log
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Julia Version 1.6.0-DEV.913
Commit 4c805d2310 (2020-09-14 14:07 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed WeakRefStrings ─────────────── v0.6.2
Installed QuadGK ─────────────────────── v2.4.1
Installed Rmath ──────────────────────── v0.6.1
Installed XSim ───────────────────────── v0.4.0
Installed DataStructures ─────────────── v0.18.5
Installed DataFrames ─────────────────── v0.21.7
Installed Tables ─────────────────────── v1.0.5
Installed Reexport ───────────────────── v0.2.0
Installed TableTraits ────────────────── v1.0.0
Installed Compat ─────────────────────── v3.16.0
Installed DataValueInterfaces ────────── v1.0.0
Installed PDMats ─────────────────────── v0.10.0
Installed JSON ───────────────────────── v0.21.1
Installed SpecialFunctions ───────────── v0.10.3
Installed CategoricalArrays ──────────── v0.8.2
Installed OrderedCollections ─────────── v1.3.0
Installed FilePathsBase ──────────────── v0.8.0
Installed SortingAlgorithms ──────────── v0.3.1
Installed StructTypes ────────────────── v1.1.0
Installed Missings ───────────────────── v0.4.4
Installed DataAPI ────────────────────── v1.3.0
Installed JWAS ───────────────────────── v0.9.0
Installed InvertedIndices ────────────── v1.0.0
Installed ProgressMeter ──────────────── v1.3.3
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed Parsers ────────────────────── v1.0.10
Installed StatsBase ──────────────────── v0.33.1
Installed PooledArrays ───────────────── v0.5.3
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed FillArrays ─────────────────── v0.9.6
Installed StatsFuns ──────────────────── v0.9.5
Installed CSV ────────────────────────── v0.6.2
Installed Distributions ──────────────── v0.23.11
Updating `~/.julia/environments/v1.6/Project.toml`
[3d41126b] + XSim v0.4.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[336ed68f] + CSV v0.6.2
[324d7699] + CategoricalArrays v0.8.2
[34da2185] + Compat v3.16.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.7
[864edb3b] + DataStructures v0.18.5
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.11
[48062228] + FilePathsBase v0.8.0
[1a297f60] + FillArrays v0.9.6
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[c9a035f4] + JWAS v0.9.0
[e1d29d7a] + Missings v0.4.4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.0
[90014a1f] + PDMats v0.10.0
[69de0a69] + Parsers v1.0.10
[2dfb63ee] + PooledArrays v0.5.3
[92933f4c] + ProgressMeter v1.3.3
[1fd47b50] + QuadGK v2.4.1
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[2913bbd2] + StatsBase v0.33.1
[4c63d2b9] + StatsFuns v0.9.5
[856f2bd8] + StructTypes v1.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[ea10d353] + WeakRefStrings v0.6.2
[3d41126b] + XSim v0.4.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing XSim
Status `/tmp/jl_VLPx9g/Project.toml`
[336ed68f] CSV v0.6.2
[a93c6f00] DataFrames v0.21.7
[31c24e10] Distributions v0.23.11
[c9a035f4] JWAS v0.9.0
[3d41126b] XSim v0.4.0
[37e2e46d] LinearAlgebra
[de0858da] Printf
[8dfed614] Test
Status `/tmp/jl_VLPx9g/Manifest.toml`
[336ed68f] CSV v0.6.2
[324d7699] CategoricalArrays v0.8.2
[34da2185] Compat v3.16.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.7
[864edb3b] DataStructures v0.18.5
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.11
[48062228] FilePathsBase v0.8.0
[1a297f60] FillArrays v0.9.6
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[c9a035f4] JWAS v0.9.0
[e1d29d7a] Missings v0.4.4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.0
[90014a1f] PDMats v0.10.0
[69de0a69] Parsers v1.0.10
[2dfb63ee] PooledArrays v0.5.3
[92933f4c] ProgressMeter v1.3.3
[1fd47b50] QuadGK v2.4.1
[189a3867] Reexport v0.2.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.5
[856f2bd8] StructTypes v1.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.5
[ea10d353] WeakRefStrings v0.6.2
[3d41126b] XSim v0.4.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Sampling 2 animals into base population.
Sampling 2 animals into base population.
signal (11): Segmentation fault
in expression starting at /home/pkgeval/.julia/packages/XSim/FqbfH/test/runtests.jl:17
uv_write2 at /workspace/srcdir/libuv/src/unix/stream.c:1397
uv_write at /workspace/srcdir/libuv/src/unix/stream.c:1492
jl_uv_write at /buildworker/worker/package_linux64/build/src/jl_uv.c:471
uv_write_async at ./stream.jl:1024
uv_write at ./stream.jl:981
unsafe_write at ./stream.jl:1064
unsafe_write at ./io.jl:646 [inlined]
write at ./io.jl:669 [inlined]
format at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Printf/src/Printf.jl:726
#sampleRan#3 at /home/pkgeval/.julia/packages/XSim/FqbfH/src/mating/mating.jl:8 [inlined]
sampleRan at /home/pkgeval/.julia/packages/XSim/FqbfH/src/mating/mating.jl:3
unknown function (ip: 0x7f559afa83b6)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2163 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2345
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1682 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:115
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:204
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:155 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:561
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:669
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:837
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:785
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:785
jl_toplevel_eval_in at /buildworker/worker/package_linux64/build/src/toplevel.c:880
eval at ./boot.jl:345 [inlined]
include_string at ./loading.jl:1015
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2163 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2345
_include at ./loading.jl:1069
include at ./client.jl:444
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2163 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2345
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1682 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:115
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:204
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:155 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:561
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:669
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:837
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:785
jl_toplevel_eval_in at /buildworker/worker/package_linux64/build/src/toplevel.c:880
eval at ./boot.jl:345
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2163 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2345
exec_options at ./client.jl:261
_start at ./client.jl:485
jfptr__start_17543.clone_1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2163 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2345
jl_apply at /buildworker/worker/package_linux64/build/ui/../src/julia.h:1682 [inlined]
true_main at /buildworker/worker/package_linux64/build/ui/repl.c:106
main at /buildworker/worker/package_linux64/build/ui/repl.c:227
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /opt/julia/bin/julia (unknown line)
Allocations: 11484168 (Pool: 11479693; Big: 4475); GC: 11
ERROR: Package XSim errored during testing (received signal: 11)
Stacktrace:
[1] pkgerror(::String, ::Vararg{String, N} where N)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1580
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:328
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:315
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19