-
Notifications
You must be signed in to change notification settings - Fork 5
/
Copy path1.5.0-DEV-c9d183757a.log
225 lines (215 loc) · 10.4 KB
/
1.5.0-DEV-c9d183757a.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
Julia Version 1.5.0-DEV.62
Commit c9d183757a (2020-01-13 22:37 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed QHull ──────────────── v0.1.2
Installed Parsers ────────────── v0.3.10
Installed CodecZlib ──────────── v0.6.0
Installed CommonSubexpressions ─ v0.2.0
Installed TranscodingStreams ─── v0.9.5
Installed BinaryProvider ─────── v0.5.8
Installed GeometryTypes ──────── v0.7.7
Installed MathOptInterface ───── v0.9.9
Installed OpenSpecFun_jll ────── v0.5.3+1
Installed FixedPointNumbers ──── v0.7.1
Installed RecipesBase ────────── v0.7.0
Installed NaNMath ────────────── v0.3.3
Installed JSON ───────────────── v0.21.0
Installed Calculus ───────────── v0.5.1
Installed StaticArrays ───────── v0.12.1
Installed CodecBzip2 ─────────── v0.6.0
Installed MacroTools ─────────── v0.5.3
Installed OrderedCollections ─── v1.1.0
Installed DiffRules ──────────── v1.0.0
Installed DataStructures ─────── v0.17.7
Installed ParameterJuMP ──────── v0.1.2
Installed ColorTypes ─────────── v0.9.1
Installed DiffResults ────────── v1.0.2
Installed IniFile ────────────── v0.5.0
Installed HTTP ───────────────── v0.8.8
Installed PyCall ─────────────── v1.91.2
Installed JSONSchema ─────────── v0.2.0
Installed SpecialFunctions ───── v0.9.0
Installed VersionParsing ─────── v1.2.0
Installed Polyhedra ──────────── v0.5.7
Installed BenchmarkTools ─────── v0.4.3
Installed Conda ──────────────── v1.3.0
Installed JuMP ───────────────── v0.20.1
Installed MutableArithmetics ─── v0.2.1
Installed ForwardDiff ────────── v0.10.8
Installed MbedTLS ────────────── v0.7.0
Updating `~/.julia/environments/v1.5/Project.toml`
[a8468747] + QHull v0.1.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[6e4b80f9] + BenchmarkTools v0.4.3
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[523fee87] + CodecBzip2 v0.6.0
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.9.1
[bbf7d656] + CommonSubexpressions v0.2.0
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.7
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[53c48c17] + FixedPointNumbers v0.7.1
[f6369f11] + ForwardDiff v0.10.8
[4d00f742] + GeometryTypes v0.7.7
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[682c06a0] + JSON v0.21.0
[7d188eb4] + JSONSchema v0.2.0
[4076af6c] + JuMP v0.20.1
[1914dd2f] + MacroTools v0.5.3
[b8f27783] + MathOptInterface v0.9.9
[739be429] + MbedTLS v0.7.0
[d8a4904e] + MutableArithmetics v0.2.1
[77ba4419] + NaNMath v0.3.3
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[774612a8] + ParameterJuMP v0.1.2
[69de0a69] + Parsers v0.3.10
[67491407] + Polyhedra v0.5.7
[438e738f] + PyCall v1.91.2
[a8468747] + QHull v0.1.2
[3cdcf5f2] + RecipesBase v0.7.0
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[3bb67fe8] + TranscodingStreams v0.9.5
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib ─→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_SlMZY4/Project.toml`
[no changes]
Updating `/tmp/jl_SlMZY4/Manifest.toml`
[no changes]
Building CodecBzip2 → `~/.julia/packages/CodecBzip2/T5yr7/deps/build.log`
Updating `/tmp/jl_vINfVa/Project.toml`
[no changes]
Updating `/tmp/jl_vINfVa/Manifest.toml`
[no changes]
Building Conda ─────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_orPoav/Project.toml`
[no changes]
Updating `/tmp/jl_orPoav/Manifest.toml`
[no changes]
Building PyCall ────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_jW55SQ/Project.toml`
[no changes]
Updating `/tmp/jl_jW55SQ/Manifest.toml`
[no changes]
Building MbedTLS ───→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Updating `/tmp/jl_OeqPuC/Project.toml`
[no changes]
Updating `/tmp/jl_OeqPuC/Manifest.toml`
[no changes]
Testing QHull
Installed Combinatorics ─ v1.0.0
Installed GLPK ────────── v0.12.1
Installed Polynomials ─── v0.6.0
Updating `/tmp/jl_de82zL/Project.toml`
[861a8166] + Combinatorics v1.0.0
[60bf3e95] + GLPK v0.12.1
Updating `/tmp/jl_de82zL/Manifest.toml`
[861a8166] + Combinatorics v1.0.0
[60bf3e95] + GLPK v0.12.1
[f27b6e38] + Polynomials v0.6.0
Building GLPK → `~/.julia/packages/GLPK/HjJiX/deps/build.log`
Updating `/tmp/jl_XvwGOr/Project.toml`
[no changes]
Updating `/tmp/jl_XvwGOr/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_de82zL/Project.toml`
[861a8166] Combinatorics v1.0.0
[60bf3e95] GLPK v0.12.1
[4d00f742] GeometryTypes v0.7.7
[4076af6c] JuMP v0.20.1
[67491407] Polyhedra v0.5.7
[438e738f] PyCall v1.91.2
[a8468747] QHull v0.1.2
[3cdcf5f2] RecipesBase v0.7.0
[90137ffa] StaticArrays v0.12.1
[8dfed614] Test
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package scipy.spatial could not be found by pyimport. Usually this means
that you did not install scipy.spatial in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the scipy.spatial module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`,
where PKG is the Anaconda package the contains the module scipy.spatial,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /home/pkgeval/.julia/packages/QHull/Nu3bw/src/QHull.jl:16
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[6] _require_from_serialized(::String) at ./loading.jl:748
[7] _require(::Base.PkgId) at ./loading.jl:1039
[8] require(::Base.PkgId) at ./loading.jl:927
[9] require(::Module, ::Symbol) at ./loading.jl:922
[10] include(::String) at ./client.jl:439
[11] top-level scope at none:6
during initialization of module QHull
in expression starting at /home/pkgeval/.julia/packages/QHull/Nu3bw/test/runtests.jl:2
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/QHull/Nu3bw/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/QHull/Nu3bw/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package QHull errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13