ditto: can't open the index file

[DanielAmsel]

I try to use DITTO, but the columns remain empty. The log says that it can not open the index file.

Steps to reproduce the behavior:

1. Go to opencravat webpage
2. upload VCF (use HG38)
3. select DITTO
4. inspect log file of the job (error is empty)

I expected a result in the table. I do not understand which index file is meant.

Server: Ubuntu 20.04.6LTS
OC: 2.11.1

[skanderson]

Is this running on your own server or on run.opencravat.org ?

[DanielAmsel]

Hi,
this is on my own ubuntu server.
Best,
Daniel

[skanderson]

Ok, let me retry the installation process from scratch. I believe there was a server issue when that module was published. It sounds like when you installed it didn't get the pytabix index file.

It might take me a week or two to track down the issue with the module store / installation process. If you want to try a workaround in the meantime, you could download all the data files directly from the store here and extract the files onto your server at {oc-modules-dir}/annotators/ditto/data/.

[DanielAmsel]

Thank you for the workaround. I will give it a try!