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It seems DYLD is missing for your bowtie2. |
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I got this error when running the test files.
I reinstalled bowtie2, but still same issue. I did this on 2 computers (mac's).
Any advice?
2022-03-24 09:27:40,846 - INFO: Mapping reads to seed bowtie2 index ...
2022-03-24 09:27:40,907 - ERROR:
dyld: Symbol not found: __ZNSt12length_errorD1Ev
Referenced from: /Users/a1638383/opt/anaconda3/bin/bowtie2-align-s
Expected in: /usr/local/lib/libtbb.dylib
in /Users/a1638383/opt/anaconda3/bin/bowtie2-align-s
(ERR): Description of arguments failed!
Exiting now ...
2022-03-24 09:27:40,908 - ERROR:
Traceback (most recent call last):
File "/Users/a1638383/opt/anaconda3/bin/get_organelle_from_reads.py", line 3942, in main
log_handler=log_handler)
File "/Users/a1638383/opt/anaconda3/bin/get_organelle_from_reads.py", line 3040, in making_seed_reads_using_mapping
which_bowtie2=which_bowtie2, bowtie2_mode="", bowtie2_other_options=bowtie2_other_options)
File "/Users/a1638383/opt/anaconda3/lib/python3.7/site-packages/GetOrganelleLib/pipe_control_func.py", line 398, in map_with_bowtie2
raise Exception("")
Exception
Total cost 7.68 s
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