configure.bioconda.ac

#                                               -*- Autoconf -*-
# Process this file with autoconf to produce a configure script.

AC_PREREQ([2.63])
AC_INIT(scallop, 0.10.5, shaomingfu@gmail.com)
AM_INIT_AUTOMAKE()
AC_CONFIG_SRCDIR([src/main.cc])
AC_CONFIG_HEADERS([config.h])

# Checks for programs.
AC_PROG_CXX
AC_PROG_CC
AC_PROG_RANLIB

# Check environmental variables
#AS_IF([test "s$HTSLIB" = "s"],[AC_MSG_ERROR([*** Please set environment variable HTSLIB ***])]) 
#AS_IF([test "s$CLP_HOME" = "s"],[AC_MSG_ERROR([*** Please set environment variable CLP_HOME ***])]) 
#AS_IF([test "s$BOOST_HOME" = "s"],[AC_MSG_ERROR([*** Please set environment variable BOOST_HOME ***])]) 

# Checks for header files.
AC_CHECK_HEADERS([stdint.h])

# Checks for typedefs, structures, and compiler characteristics.
#AC_CHECK_HEADER_STDBOOL
AC_C_INLINE
AC_TYPE_INT32_T
AC_TYPE_INT64_T
AC_TYPE_UINT32_T

# Checks for library functions.

AC_CONFIG_FILES([Makefile
				 lib/Makefile
				 lib/util/Makefile
				 lib/gtf/Makefile
				 lib/graph/Makefile
                 src/Makefile])
AC_OUTPUT