libhts is also required for compilation

[EA2106-Universite-Francois-Rabelais]

Dear @prashantpandey and @kingsfordgroup,
congratulation for this very nice and promising work. I tried to install VariantStore within a conda environment. It seems that libunwind, libjemalloc and libhts are also required (may be good to add this to the readme!).
If it can help, please find the conda env I created and used under RedHatEnterpriseServer 7.2:

channels:
  - anaconda
  - conda-forge
  - bioconda
  - Microsoft
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=1_gnu
  - binutils_impl_linux-64=2.36.1=h193b22a_2
  - binutils_linux-64=2.36=hf3e587d_33
  - bzip2=1.0.8=h7b6447c_0
  - ca-certificates=2021.5.30=ha878542_0
  - certifi=2021.5.30=py38h578d9bd_0
  - curl=7.71.1=h8f29fe8_2
  - gcc_impl_linux-64=7.5.0=habd7529_19
  - gcc_linux-64=7.5.0=h47867f9_33
  - gperftools=2.7=h767d802_2
  - gxx_impl_linux-64=7.5.0=hd0bb8aa_19
  - gxx_linux-64=7.5.0=h555fc39_33
  - htslib=1.1=h18ffd7a_1
  - jemalloc=5.2.1=he1b5a44_4
  - kernel-headers_linux-64=2.6.32=he073ed8_14
  - krb5=1.19.1=h3535a68_0
  - ld_impl_linux-64=2.36.1=hea4e1c9_2
  - libcurl=7.71.1=h303737a_2
  - libedit=3.1.20191231=h14c3975_1
  - libffi=3.3=he6710b0_2
  - libgcc-devel_linux-64=7.5.0=hda03d7c_19
  - libgcc-ng=11.1.0=hc902ee8_8
  - libgomp=11.1.0=hc902ee8_8
  - libprotobuf=3.13.0.1=hd408876_0
  - libssh2=1.9.0=h1ba5d50_1
  - libstdcxx-devel_linux-64=7.5.0=hb016644_19
  - libstdcxx-ng=11.1.0=h56837e0_8
  - libunwind=1.5.0=h9c3ff4c_1
  - ncurses=6.2=he6710b0_1
  - openssl=1.1.1k=h7f98852_1
  - perl=5.26.2=h14c3975_0
  - pip=20.2.4=py38_0
  - protobuf=3.13.0.1=py38he6710b0_1
  - python=3.8.5=h7579374_1
  - python_abi=3.8=2_cp38
  - readline=8.0=h7b6447c_0
  - sdsl-lite=2.1.1=hc9558a2_1001
  - setuptools=50.3.0=py38hb0f4dca_1
  - six=1.15.0=py_0
  - sqlite=3.33.0=h62c20be_0
  - sysroot_linux-64=2.12=he073ed8_14
  - tk=8.6.10=hbc83047_0
  - wheel=0.35.1=py_0
  - xz=5.2.5=h7b6447c_0
  - zlib=1.2.11=h7b6447c_3

Working in this env, the procedure with the example dataset ended successfully and the graph was created.

Best regards,

Thomas

[prashantpandey]

Hello @EA2106-Universite-Francois-Rabelais ,

Thanks for using our tool and providing the Conda environment. We will update the README file.

Thanks,
Prashant