corrected query

hrshdhgd · hrshdhgd · commit f025b30338d4 · 2024-09-22T11:33:17.000-05:00
diff --git a/src/uniprot2s3/main.py b/src/uniprot2s3/main.py
@@ -186,7 +186,7 @@ def fetch_uniprot_reference_proteome_data() -> list:
     file_path = Path(RAW_DATA_DIR) / f"{PROTEOMES_FILENAME}.{UNIPROT_DESIRED_FORMAT}"
     # all_proteomes_query = "%28*%29"
     filtered_proteomes_query = (
-        "(*)+AND+((superkingdom:Bacteria)+OR+(superkingdom:Archaea))+AND+((proteome_type:1)+OR+(proteome_type:2))"
+        "((superkingdom:Bacteria)+OR+(superkingdom:Archaea))+AND+((proteome_type:1)+OR+(proteome_type:2))"
     )
 
     url = construct_query_url(

Original file line number	Diff line number	Diff line change
`@@ -186,7 +186,7 @@ def fetch_uniprot_reference_proteome_data() -> list:`
`186`	`186`	`file_path = Path(RAW_DATA_DIR) / f"{PROTEOMES_FILENAME}.{UNIPROT_DESIRED_FORMAT}"`
`187`	`187`	`# all_proteomes_query = "%28*%29"`
`188`	`188`	`filtered_proteomes_query = (`
`189`		`- "(*)+AND+((superkingdom:Bacteria)+OR+(superkingdom:Archaea))+AND+((proteome_type:1)+OR+(proteome_type:2))"`
	`189`	`+ "((superkingdom:Bacteria)+OR+(superkingdom:Archaea))+AND+((proteome_type:1)+OR+(proteome_type:2))"`
`190`	`190`	`)`
`191`	`191`
`192`	`192`	`url = construct_query_url(`