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example.blastn
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Query= MPI-GMI|Ath-1001-Genomes|pseudo-
genome|108|Chr2:17711032..17712092|Col-0_gi:AT2G42540.2|V0.2
(1061 letters)
>MPI-GMI|Ath-1001-Genomes|pseudo-
genome|9712|Chr2:17711032..17712092|Col-
0_gi:AT2G42540.2|V0.2
Length = 1061
Score = 1562 bits (985), Expect = 0.0
Identities = 1024/1061 (96%)
Strand = Plus / Plus
Query: 1 atcgatctataaaacgatactattggagattagattcttctcatctcactttgttcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcgatctataaaacgatactattggagattagattcttctcatctcactttgttcatct 60
Query: 61 aaaaactcctcctttcatttncaaacaaaaacttctttttattctcacatcttnaagatc 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 aaaaactcctcctttcatttccaaacaaaaacttctttttattctcacatcttaaagatc 120
Query: 121 tctctcatggcgatgtctttctcaggagctgttctcactggtatggcttcttctttccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctctcatggcgatgtctttctcaggagctgttctcactggtatggcttcttctttccac 180
Query: 181 agcggagccaagcagagcagcttcggcgctgtcagagncggccagaaaactcagttcgtc 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 agcggagccaagcagagcagcttcggcgctgtcagagtcggccagaaaactcagttcgtc 240
Query: 241 gtcgtttctcaacgcaagaagtcgttgatctacgccgctaaaggngacggcaacatccnc 300
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 241 gtcgtttctcaacgcaagaagtcgttgatctacgccgctaaaggtgacggcaacatcctc 300
Query: 301 gatgncctcaangaggccacgtaagtctacattctttcttcttttagtatcttgcctcat 360
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatgacctcaacgaggccacgtaagtctacattctttcttcttttagtatcttgcctcat 360
Query: 361 aagtaaggatcttagcaggcaatgtttatggtatactatattagtanagattttagtgga 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 361 aagtaaggatcttagcaggcaatgtttatggtatactatattagtatagattttagtgga 420
Query: 421 aatatgtttgttttgaacttattttatgatcatatttgactattatcaaagataaagatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatatgtttgttttgaacttattttatgatcatatttgactattatcaaagataaagatt 480
Query: 481 catataccgtacattatatatctctatttttctagtttacatgtatagctctaagtttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catataccgtacattatatatctctatttttctagtttacatgtatagctctaagtttat 540
Query: 541 ttgatgattctgttgactacttttggatatgtgttttgaaacctttgataaatactaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgatgattctgttgactacttttggatatgtgttttgaaacctttgataaatactaaaa 600
Query: 601 taaattttaatttgaaaatgatatagaaagaaagcttcagatttcgtgacngntaaaaca 660
||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 601 taaattttaatntgaaaatgatatagaaagaaagcttcagatttcgtgacggataaaaca 660
Query: 661 aaagaggcattagcaganggcgagaaagcgaaagactacgttgttgnnnnnnncagtgaa 720
||||||||||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct: 661 aaagaggcattagcagatggngagaaagcgaaagactacgttgttgaaaagaacagtgaa 720
Query: 721 accgcagatacattgggtaaagaagctgagaaagcttcggcgtatgtggaggagaaagga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 accgcagatacattgggtaaagaagctgagaaagcttcggcgtatgtggaggagaaagga 780
Query: 781 aaagaagcggcaaacaaggcggcagagttcgcggagggtaaagcaggagaggctaaggat 840
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 781 aaagaagccgcaaacaaggcggctgagttcgcagagggtaaagcaggagaggctaaggat 840
Query: 841 gccncaaagnagggtcttacctaatcagttaatttcaancacttaaactcgtagatatat 900
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 841 gccacaaagtagggtcttacctaatcagttaatttcaagcacttaaactcgtagatatat 900
Query: 901 tgatcnnnnnnctctctcttcatgtttaatagtacttacaataagatgagtctgttgtaa 960
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tgatccatatcctctctcttcatgtttaatagtacttacaataagatgagtctgttgtaa 960
Query: 961 tttctattaatttcacatcacaactgaaataagatatggtatccncagtcaccgtcacat 1020
|||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct: 961 tttctattaatttcacatatcaactgaaataagatatggtatccacactcaccgtcacat 1020
Query: 1021 tctttaatgttttgcaaaanattcagtagacaaaattaaat 1061
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1021 tctttaatgttttgcaaaanattcaatagacaaaattaaat 1061
Lambda K H
1.10 0.333 0.549
Gapped
Lambda K H
1.10 0.333 0.549
Matrix: blastn matrix:1 -1
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Number of Hits to DB: 234
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1061
Length of database: 1061
Length adjustment: 21
Effective length of query: 1040
Effective length of database: 1040
Effective search space: 1081600
Effective search space used: 1081600
X1: 13 (20.6 bits)
X2: 18 (28.5 bits)
X3: 63 (99.9 bits)
S1: 10 (17.4 bits)
S2: 10 (17.4 bits)