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gapped.blastn
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Query= MPI-GMI|Ath-1001-Genomes|pseudo-
genome|108|Chr2:17711032..17712092|Col-0_gi:AT2G42540.2|V0.2
(1061 letters)
>MPI-GMI|Ath-1001-Genomes|pseudo-
genome|9712|Chr2:17711032..17712092|Col-
0_gi:AT2G42540.2|V0.2
Length = 1044
Score = 1394 bits (879), Expect = 0.0
Identities = 1007/1061 (94%), Gaps = 17/1061 (1%)
Strand = Plus / Plus
Query: 1 atcgatctataaaacgatactattggagattagattcttctcatctcactttgttcatct 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 atcgatctataaaacgatactattggagattagattct-ctcatctcactttgttcatct 59
Query: 61 aaaaactcctcctttcatttncaaacaaaaacttctttttattctcacatcttnaagatc 120
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 60 aaaaactcctcctttcatttccaaacaaaaacttctttttattctcacatca--aagatc 117
Query: 121 tctctcatggcgatgtctttctcaggagctgttctcactggtatggcttcttctttccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tctctcatggcgatgtctttctcaggagctgttctcactggtatggcttcttctttccac 177
Query: 181 agcggagccaagcagagcagcttcggcgctgtcagagncggccagaaaactcagttcgtc 240
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 178 agcggagccaagcagagcagcttcggcgc---cagagtcggccagaaaactcagttcgtc 234
Query: 241 gtcgtttctcaacgcaagaagtcgttgatctacgccgctaaaggngacggcaacatccnc 300
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct: 235 gtcgtttctcaacgcaagaagtcgttgatctacgccgctaaaggtgacggca-catcctc 293
Query: 301 gatgncctcaangaggccacgtaagtctacattctttcttcttttagtatcttgcctcat 360
|||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 294 gatgacctcaacgaggccacgtaagtctacattctttct-cttttagtatcttgcctcat 352
Query: 361 aagtaaggatcttagcaggcaatgtttatggtatactatattagtanagattttagtgga 420
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 353 aagtaaggatcttagcaggcaatgtttatggtatactatatta-tatagattttagtgga 411
Query: 421 aatatgtttgttttgaacttattttatgatcatatttgactattatcaaagataaagatt 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 aatatgtttgttttgaacttattttatgatcatatttga-tattatcaaagataaagatt 470
Query: 481 catataccgtacattatatatctctatttttctagtttacatgtatagctctaagtttat 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 471 catataccgtacattatatatc-ctatttttctagtttacatgtatagctctaagtttat 529
Query: 541 ttgatgattctgttgactacttttggatatgtgttttgaaacctttgataaatactaaaa 600
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttgatgattctgttgacta--tttggatatgtgttttgaaacctttgataaatactaaaa 587
Query: 601 taaattttaatttgaaaatgatatagaaagaaagcttcagatttcgtgacngntaaaaca 660
||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||
Sbjct: 588 taaattttaatntgaaaatgatatagaaa--aagcttcagatttcgtgacggataaaaca 645
Query: 661 aaagaggcattagcaganggcgagaaagcgaaagactacgttgttgnnnnnnncagtgaa 720
||||||||||||||||| || |||||||||||| ||||||||||| |||||||
Sbjct: 646 aaagaggcattagcagatggngagaaagcgaaa--ctacgttgttgaaaagaacagtgaa 703
Query: 721 accgcagatacattgggtaaagaagctgagaaagcttcggcgtatgtggaggagaaagga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 accgcagatacattgggtaaagaagctgagaaagcttcggcgtatgtggaggagaaagga 763
Query: 781 aaagaagcggcaaacaaggcggcagagttcgcggagggtaaagcaggagaggctaaggat 840
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 764 aaagaagccgcaaacaaggcggctgagttcgcagagggtaaagcaggagaggctaaggat 823
Query: 841 gccncaaagnagggtcttacctaatcagttaatttcaancacttaaactcgtagatatat 900
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 824 gccacaaagtagggtcttacctaatcagttaatttcaagcacttaaactcgtagatatat 883
Query: 901 tgatcnnnnnnctctctcttcatgtttaatagtacttacaataagatgagtctgttgtaa 960
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tgatccatatcctctctcttcatgtttaatagtacttacaataagatgagtctgttgtaa 943
Query: 961 tttctattaatttcacatcacaactgaaataagatatggtatccncagtcaccgtcacat 1020
|||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct: 944 tttctattaatttcacatatcaactgaaataagatatggtatccacactcaccgtcacat 1003
Query: 1021 tctttaatgttttgcaaaanattcagtagacaaaattaaat 1061
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1004 tctttaatgttttgcaaaanattcaatagacaaaattaaat 1044
Score = 25.4 bits (15), Expect = 0.025
Identities = 18/21 (85%)
Strand = Plus / Minus
Query: 1023 tttaatgttttgcaaaanatt 1043
|| ||| |||||||||| |||
Sbjct: 1029 ttgaatnttttgcaaaacatt 1009
Lambda K H
1.10 0.333 0.549
Gapped
Lambda K H
1.10 0.333 0.549
Matrix: blastn matrix:1 -1
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1
Number of Hits to DB: 218
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 1061
Length of database: 1044
Length adjustment: 21
Effective length of query: 1040
Effective length of database: 1023
Effective search space: 1063920
Effective search space used: 1063920
X1: 13 (20.6 bits)
X2: 18 (28.5 bits)
X3: 63 (99.9 bits)
S1: 10 (17.4 bits)
S2: 10 (17.4 bits)